-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_190

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 737, 770
Sorry, prediction snap_scaffold_190-snap.2-T1 fails validation.
(GCT)	 AG	737-770	GT	AGG
(TGA)	 AG	1025-1126	GT	AGG
(TTT)	 AG	5196-5257	TT	GAT
-recovered snap_scaffold_190-snap.2-T1, terminal, 5196, 5257
-recovered snap_scaffold_190-snap.2-T1, internal, 737, 770
-recovered snap_scaffold_190-snap.2-T1, internal, 1025, 1126

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 199, 276
Sorry, prediction pasa_asmbl_22748.p1 fails validation.
(GGG)	 CA	199-276	GT	AGG
(ACT)	 AG	391-434	GT	AGG
(GAA)	 AG	846-1032	GT	CTG
(ATC)	 AG	1266-1532	AG	AGA
-recovered pasa_asmbl_22748.p1, terminal, 1266, 1532
-recovered pasa_asmbl_22748.p1, internal, 391, 434
-recovered pasa_asmbl_22748.p1, internal, 846, 1032
Couldn't classify 9541, 9615
Sorry, prediction snap_scaffold_190-snap.1-T1 fails validation.
(ATG)	 CA	6888-6905	GT	AAG
(GCT)	 AG	8367-8435	GT	AGG
(GTG)	 AG	8776-8964	GT	AGG
(GGT)	 AG	9201-9257	GT	AGG
(ATC)	 AG	9541-9615	GT	AGG
-recovered snap_scaffold_190-snap.1-T1, initial, 6888, 6905
-recovered snap_scaffold_190-snap.1-T1, internal, 8367, 8435
-recovered snap_scaffold_190-snap.1-T1, internal, 8776, 8964
-recovered snap_scaffold_190-snap.1-T1, internal, 9201, 9257
-recovered snap_scaffold_190-snap.1-T1, internal, 9541, 9615
Couldn't classify 846, 1032
Sorry, prediction GlimmerHMM_glimmerT_59979-T1 fails validation.
(GAA)	 AG	846-1032	GT	CTG
(ATC)	 AG	1266-1532	AG	AGA
-recovered GlimmerHMM_glimmerT_59979-T1, terminal, 1266, 1532
-recovered GlimmerHMM_glimmerT_59979-T1, internal, 846, 1032
Couldn't classify 9541, 9615
Sorry, prediction Augustus_model.g39724.t1 fails validation.
(ATG)	 AC	8313-8435	GT	AGG
(GTG)	 AG	8776-8964	GT	AGG
(GGT)	 AG	9201-9257	GT	AGG
(ATC)	 AG	9541-9615	GT	AGG
-recovered Augustus_model.g39724.t1, initial, 8313, 8435
-recovered Augustus_model.g39724.t1, internal, 8776, 8964
-recovered Augustus_model.g39724.t1, internal, 9201, 9257
-recovered Augustus_model.g39724.t1, internal, 9541, 9615
Couldn't classify 200, 276
Sorry, prediction snap_scaffold_190-snap.3-T1 fails validation.
(GGG)	 AG	200-276	GT	AGG
(ACT)	 AG	391-434	GT	AGG
(GAA)	 AG	846-1032	GT	CTG
(ATC)	 AG	1266-1532	AG	AGA
-recovered snap_scaffold_190-snap.3-T1, terminal, 1266, 1532
-recovered snap_scaffold_190-snap.3-T1, internal, 200, 276
-recovered snap_scaffold_190-snap.3-T1, internal, 391, 434
-recovered snap_scaffold_190-snap.3-T1, internal, 846, 1032
Valid prediction for Augustus_model.g39725.t1
Valid prediction for GlimmerHMM_glimmerT_59978-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3112, rend_intergenic: 737  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9999
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3112, rend_intergenic: 737  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support