-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_19/scaffold_19_9013470-9274177

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for HiQ_model.g29568.t1
Valid prediction for Augustus_model.g29570.t1
Valid prediction for snap_scaffold_19-snap.1754-T1
Valid prediction for snap_scaffold_19-snap.1751-T1
Valid prediction for Augustus_model.g29577.t1
Valid prediction for snap_scaffold_19-snap.1778-T1
Valid prediction for snap_scaffold_19-snap.1744-T1
Valid prediction for snap_scaffold_19-snap.1740-T1
Valid prediction for GlimmerHMM_glimmerT_44593-T1
Valid prediction for snap_scaffold_19-snap.1763-T1
Valid prediction for snap_scaffold_19-snap.1741-T1
Valid prediction for GlimmerHMM_glimmerT_44590-T1
Valid prediction for GlimmerHMM_glimmerT_44561-T1
Valid prediction for GlimmerHMM_glimmerT_44572-T1
Valid prediction for GlimmerHMM_glimmerT_44576-T1
Valid prediction for GlimmerHMM_glimmerT_44584-T1
Valid prediction for GlimmerHMM_glimmerT_44595-T1
Valid prediction for GlimmerHMM_glimmerT_44597-T1
Valid prediction for snap_scaffold_19-snap.1742-T1
Valid prediction for GlimmerHMM_glimmerT_44567-T1
Valid prediction for CodingQuarry_transcript_25758-T1
Valid prediction for snap_scaffold_19-snap.1796-T1
Valid prediction for GlimmerHMM_glimmerT_44563-T1
Valid prediction for pasa_asmbl_21574.p1
Valid prediction for snap_scaffold_19-snap.1797-T1
Valid prediction for Augustus_model.g29586.t1
Valid prediction for pasa_asmbl_21577.p1
Valid prediction for snap_scaffold_19-snap.1747-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_44596-T1
Valid prediction for GlimmerHMM_glimmerT_44569-T1
Valid prediction for GlimmerHMM_glimmerT_44586-T1
Valid prediction for CodingQuarry_transcript_25757-T1
Valid prediction for snap_scaffold_19-snap.1750-T1
Valid prediction for snap_scaffold_19-snap.1753-T1
Valid prediction for Augustus_model.g29587.t1
Valid prediction for GlimmerHMM_glimmerT_44581-T1
Valid prediction for snap_scaffold_19-snap.1776-T1
Valid prediction for snap_scaffold_19-snap.1786-T1
Valid prediction for CodingQuarry_transcript_25760-T1
Valid prediction for snap_scaffold_19-snap.1737-T1
Valid prediction for GlimmerHMM_glimmerT_44560-T1
Valid prediction for Augustus_model.g29588.t1
Valid prediction for snap_scaffold_19-snap.1770-T1
Valid prediction for snap_scaffold_19-snap.1759-T1
Valid prediction for snap_scaffold_19-snap.1772-T1
Valid prediction for Augustus_model.g29567.t1
Valid prediction for Augustus_model.g29571.t1
Valid prediction for GlimmerHMM_glimmerT_44564-T1
Valid prediction for snap_scaffold_19-snap.1794-T1
Valid prediction for snap_scaffold_19-snap.1735-T1
Valid prediction for snap_scaffold_19-snap.1738-T1
Valid prediction for Augustus_model.g29583.t1
Valid prediction for snap_scaffold_19-snap.1782-T1
Valid prediction for GlimmerHMM_glimmerT_44554-T1
Valid prediction for GlimmerHMM_glimmerT_44588-T1
Valid prediction for GlimmerHMM_glimmerT_44558-T1
Valid prediction for snap_scaffold_19-snap.1783-T1
Valid prediction for snap_scaffold_19-snap.1756-T1
Valid prediction for Augustus_model.g29580.t1
Valid prediction for snap_scaffold_19-snap.1734-T1
Valid prediction for Augustus_model.g29565.t1
Valid prediction for snap_scaffold_19-snap.1766-T1
Valid prediction for Augustus_model.g29584.t1
Valid prediction for snap_scaffold_19-snap.1748-T1
Valid prediction for Augustus_model.g29579.t1
Valid prediction for snap_scaffold_19-snap.1769-T1
Valid prediction for Augustus_model.g29572.t1
Valid prediction for snap_scaffold_19-snap.1798-T1
Valid prediction for snap_scaffold_19-snap.1764-T1
Valid prediction for snap_scaffold_19-snap.1760-T1
Valid prediction for Augustus_model.g29582.t1
Valid prediction for Augustus_model.g29574.t1
Valid prediction for GlimmerHMM_glimmerT_44574-T1
Valid prediction for GlimmerHMM_glimmerT_44571-T1
Valid prediction for GlimmerHMM_glimmerT_44575-T1
Valid prediction for snap_scaffold_19-snap.1745-T1
Valid prediction for HiQ_model.g29575.t1
Valid prediction for pasa_asmbl_21570.p1
Valid prediction for snap_scaffold_19-snap.1790-T1
Valid prediction for snap_scaffold_19-snap.1752-T1
Valid prediction for GlimmerHMM_glimmerT_44582-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g29573.t1
Valid prediction for snap_scaffold_19-snap.1787-T1
Valid prediction for Augustus_model.g29581.t1
Valid prediction for snap_scaffold_19-snap.1789-T1
Valid prediction for snap_scaffold_19-snap.1757-T1
Valid prediction for Augustus_model.g29564.t1
Valid prediction for snap_scaffold_19-snap.1777-T1
Valid prediction for snap_scaffold_19-snap.1768-T1
Valid prediction for snap_scaffold_19-snap.1773-T1
Valid prediction for snap_scaffold_19-snap.1784-T1
Valid prediction for GlimmerHMM_glimmerT_44559-T1
Valid prediction for snap_scaffold_19-snap.1762-T1
Valid prediction for snap_scaffold_19-snap.1749-T1
Valid prediction for GlimmerHMM_glimmerT_44577-T1
Valid prediction for snap_scaffold_19-snap.1799-T1
Valid prediction for GlimmerHMM_glimmerT_44583-T1
Valid prediction for GlimmerHMM_glimmerT_44578-T1
Valid prediction for pasa_asmbl_22325.p1
Valid prediction for GlimmerHMM_glimmerT_44589-T1
Valid prediction for GlimmerHMM_glimmerT_44592-T1
Valid prediction for CodingQuarry_transcript_25759-T1
Valid prediction for Augustus_model.g29589.t1
Valid prediction for GlimmerHMM_glimmerT_44556-T1
Valid prediction for GlimmerHMM_glimmerT_44562-T1
Valid prediction for snap_scaffold_19-snap.1733-T1
Valid prediction for pasa_asmbl_22327.p1
Valid prediction for GlimmerHMM_glimmerT_44598-T1
Valid prediction for snap_scaffold_19-snap.1788-T1
Valid prediction for snap_scaffold_19-snap.1800-T1
Valid prediction for snap_scaffold_19-snap.1767-T1
Valid prediction for HiQ_model.g29585.t1
Valid prediction for GlimmerHMM_glimmerT_44587-T1
Valid prediction for snap_scaffold_19-snap.1765-T1
Valid prediction for snap_scaffold_19-snap.1746-T1
Valid prediction for snap_scaffold_19-snap.1743-T1
Valid prediction for snap_scaffold_19-snap.1780-T1
Valid prediction for GlimmerHMM_glimmerT_44594-T1
Valid prediction for GlimmerHMM_glimmerT_44565-T1
Valid prediction for GlimmerHMM_glimmerT_44553-T1
Valid prediction for snap_scaffold_19-snap.1758-T1
Valid prediction for Augustus_model.g29566.t1
Valid prediction for snap_scaffold_19-snap.1795-T1
Valid prediction for Augustus_model.g29578.t1
Valid prediction for GlimmerHMM_glimmerT_44557-T1
Valid prediction for snap_scaffold_19-snap.1774-T1
Valid prediction for GlimmerHMM_glimmerT_44579-T1
Valid prediction for HiQ_model.g29576.t1
Valid prediction for GlimmerHMM_glimmerT_44566-T1
Valid prediction for Augustus_model.g29569.t1
Valid prediction for GlimmerHMM_glimmerT_44570-T1
Valid prediction for snap_scaffold_19-snap.1771-T1
Valid prediction for snap_scaffold_19-snap.1793-T1
Valid prediction for GlimmerHMM_glimmerT_44580-T1
Valid prediction for snap_scaffold_19-snap.1781-T1
Valid prediction for snap_scaffold_19-snap.1739-T1
Valid prediction for GlimmerHMM_glimmerT_44555-T1
Valid prediction for GlimmerHMM_glimmerT_44568-T1
Valid prediction for snap_scaffold_19-snap.1792-T1
Valid prediction for snap_scaffold_19-snap.1785-T1
Valid prediction for GlimmerHMM_glimmerT_44585-T1
Valid prediction for GlimmerHMM_glimmerT_44591-T1
Valid prediction for GlimmerHMM_glimmerT_44552-T1
Valid prediction for snap_scaffold_19-snap.1775-T1
Valid prediction for snap_scaffold_19-snap.1761-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_19-snap.1791-T1
Valid prediction for snap_scaffold_19-snap.1779-T1
Valid prediction for Augustus_model.g29590.t1
Valid prediction for GlimmerHMM_glimmerT_44573-T1
Valid prediction for snap_scaffold_19-snap.1755-T1
Valid prediction for snap_scaffold_19-snap.1736-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9211, rend_intergenic: 3553  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12347, rend_intergenic: 9831  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15198, rend_intergenic: 12489  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17987, rend_intergenic: 17606  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34766, rend_intergenic: 20135  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48581, rend_intergenic: 44109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52810, rend_intergenic: 48868  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59590, rend_intergenic: 55374  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77566, rend_intergenic: 65725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91768, rend_intergenic: 90882  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93778, rend_intergenic: 92258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101480, rend_intergenic: 94765  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104600, rend_intergenic: 101727  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116099, rend_intergenic: 107496  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116868, rend_intergenic: 116146  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124903, rend_intergenic: 120327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135147, rend_intergenic: 128171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141991, rend_intergenic: 136380  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146559, rend_intergenic: 142360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148999, rend_intergenic: 147677  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153274, rend_intergenic: 152218  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187171, rend_intergenic: 184156  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200724, rend_intergenic: 190929  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 221288, rend_intergenic: 212894  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 223891, rend_intergenic: 222552  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 260708
-exon list size: 525


building trellis

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20.9    
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22.8    
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23.9    
24.1    
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24.9    
25.0    
25.2    
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25.8    
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26.8    
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27.1    
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27.7    
27.9    
28.1    
28.3    
28.5    
28.7    
28.8    
29.0    
29.2    
29.4    
29.6    
29.8    
30.0    
30.2    
30.4    
30.6    
30.7    
30.9    
31.1    
31.3    
31.5    
31.7    
31.9    
32.1    
32.3    
32.4    
32.6    
32.8    
33.0    
33.2    
33.4    
33.6    
33.8    
34.0    
34.2    
34.3    
34.5    
34.7    
34.9    
35.1    
35.3    
35.5    
35.7    
35.9    
36.1    
36.2    
36.4    
36.6    
36.8    
37.0    
37.2    
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37.6    
37.8    
38.0    
38.1    
38.3    
38.5    
38.7    
38.9    
39.1    
39.3    
39.5    
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40.0    
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40.8    
41.0    
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41.4    
41.6    
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42.9    
43.1    
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44.8    
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92.8    
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93.9    
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94.9    
95.1    
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95.8    
96.0    
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96.8    
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98.1    
98.3    
98.5    
98.7    
98.9    
99.1    
99.2    
99.4    
99.6    
99.8    
-found 52 predictions from path traversal
Error with prediction: snap lend_intergenic: 9211, rend_intergenic: 3553  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12347, rend_intergenic: 9831  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15198, rend_intergenic: 12489  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17987, rend_intergenic: 17606  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34766, rend_intergenic: 20135  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48581, rend_intergenic: 44109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52810, rend_intergenic: 48868  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59590, rend_intergenic: 55374  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77566, rend_intergenic: 65725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91768, rend_intergenic: 90882  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93778, rend_intergenic: 92258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101480, rend_intergenic: 94765  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104600, rend_intergenic: 101727  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116099, rend_intergenic: 107496  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116868, rend_intergenic: 116146  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124903, rend_intergenic: 120327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135147, rend_intergenic: 128171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141991, rend_intergenic: 136380  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146559, rend_intergenic: 142360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148999, rend_intergenic: 147677  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153274, rend_intergenic: 152218  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187171, rend_intergenic: 184156  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200724, rend_intergenic: 190929  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 221288, rend_intergenic: 212894  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 223891, rend_intergenic: 222552  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 33 predictions persist after filtering for low support