-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_19/scaffold_19_8971005-9017021

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_44549-T1
Valid prediction for snap_scaffold_19-snap.1732-T1
Valid prediction for GlimmerHMM_glimmerT_44550-T1
Valid prediction for Augustus_model.g29562.t1
Valid prediction for snap_scaffold_19-snap.1723-T1
Valid prediction for snap_scaffold_19-snap.1725-T1
Valid prediction for Augustus_model.g29559.t1
Valid prediction for Augustus_model.g29560.t1
Valid prediction for Augustus_model.g29563.t1
Valid prediction for snap_scaffold_19-snap.1724-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_19-snap.1722-T1
Valid prediction for snap_scaffold_19-snap.1731-T1
Valid prediction for snap_scaffold_19-snap.1726-T1
Valid prediction for snap_scaffold_19-snap.1729-T1
Valid prediction for snap_scaffold_19-snap.1727-T1
Valid prediction for snap_scaffold_19-snap.1730-T1
Valid prediction for GlimmerHMM_glimmerT_44547-T1
Valid prediction for Augustus_model.g29561.t1
Valid prediction for GlimmerHMM_glimmerT_44548-T1
Valid prediction for snap_scaffold_19-snap.1728-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15660, rend_intergenic: 6730  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17905, rend_intergenic: 16259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42548, rend_intergenic: 36919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 46017
-exon list size: 71


building trellis

1.4    
2.7    
4.1    
5.5    
6.8    
8.2    
9.6    
11.0    
12.3    
13.7    
15.1    
16.4    
17.8    
19.2    
20.5    
21.9    
23.3    
24.7    
26.0    
27.4    
28.8    
30.1    
31.5    
32.9    
34.2    
35.6    
37.0    
38.4    
39.7    
41.1    
42.5    
43.8    
45.2    
46.6    
47.9    
49.3    
50.7    
52.1    
53.4    
54.8    
56.2    
57.5    
58.9    
60.3    
61.6    
63.0    
64.4    
65.8    
67.1    
68.5    
69.9    
71.2    
72.6    
74.0    
75.3    
76.7    
78.1    
79.5    
80.8    
82.2    
83.6    
84.9    
86.3    
87.7    
89.0    
90.4    
91.8    
93.2    
94.5    
95.9    
97.3    
98.6    
-found 7 predictions from path traversal
Error with prediction: snap lend_intergenic: 15660, rend_intergenic: 6730  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17905, rend_intergenic: 16259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42548, rend_intergenic: 36919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 5 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 19737
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support