-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_19/scaffold_19_8164676-8384689

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g29482.t1
Valid prediction for GlimmerHMM_glimmerT_44468-T1
Valid prediction for snap_scaffold_19-snap.1604-T1
Valid prediction for GlimmerHMM_glimmerT_44456-T1
Valid prediction for CodingQuarry_transcript_25733-T1
Valid prediction for CodingQuarry_transcript_25726-T1
Valid prediction for snap_scaffold_19-snap.1611-T1
Valid prediction for GlimmerHMM_glimmerT_44443-T1
Valid prediction for pasa_asmbl_21502.p1
Couldn't classify 91688, 91732
Sorry, prediction pasa_asmbl_21506.p1 fails validation.
(ATT)	 AG	91688-91732	GT	TGG
(AAA)	 AG	92146-92163	GT	TGG
(ACA)	 AG	93175-93210	GT	GGG
(TGT)	 AG	93315-93382	GT	ACG
(GTA)	 AG	93459-93501	GT	AGG
(CCT)	 AG	93719-93799	GT	AGG
(GGT)	 AG	93997-94075	GT	GGG
(AGA)	 AG	94198-94294	GT	GGG
(AAT)	 AG	94467-94551	GC	AGG
(ATT)	 AG	94725-94845	GT	CGG
(TGA)	 AG	94980-95123	GT	AGG
(AGA)	 AG	95257-95343	GT	CGG
(GTG)	 AG	95646-95732	GT	AGG
(ACT)	 AG	96738-96745	AC	AGA
-recovered pasa_asmbl_21506.p1, terminal, 96738, 96745
-recovered pasa_asmbl_21506.p1, internal, 91688, 91732
-recovered pasa_asmbl_21506.p1, internal, 92146, 92163
-recovered pasa_asmbl_21506.p1, internal, 93175, 93210
-recovered pasa_asmbl_21506.p1, internal, 93315, 93382
-recovered pasa_asmbl_21506.p1, internal, 93459, 93501
-recovered pasa_asmbl_21506.p1, internal, 93719, 93799
-recovered pasa_asmbl_21506.p1, internal, 93997, 94075
-recovered pasa_asmbl_21506.p1, internal, 94198, 94294
-recovered pasa_asmbl_21506.p1, internal, 94467, 94551
-recovered pasa_asmbl_21506.p1, internal, 94725, 94845
-recovered pasa_asmbl_21506.p1, internal, 94980, 95123
-recovered pasa_asmbl_21506.p1, internal, 95257, 95343
-recovered pasa_asmbl_21506.p1, internal, 95646, 95732
Valid prediction for snap_scaffold_19-snap.1572-T1
Valid prediction for GlimmerHMM_glimmerT_44450-T1
Valid prediction for snap_scaffold_19-snap.1573-T1
Valid prediction for snap_scaffold_19-snap.1593-T1
Valid prediction for HiQ_model.g29475.t1
Valid prediction for snap_scaffold_19-snap.1589-T1
Valid prediction for snap_scaffold_19-snap.1583-T1
Valid prediction for snap_scaffold_19-snap.1598-T1
Valid prediction for GlimmerHMM_glimmerT_44464-T1
Valid prediction for HiQ_model.g29495.t1
Valid prediction for Augustus_model.g29490.t1
Valid prediction for Augustus_model.g29497.t1
Valid prediction for CodingQuarry_transcript_25729-T1
Valid prediction for HiQ_model.g29484.t1
Couldn't classify 19277, 19439
Sorry, prediction CodingQuarry_transcript_25720-T1 fails validation.
(ATG)	 CA	16083-16184	GT	AGG
(GCA)	 AG	18292-18463	GT	CAG
(ACC)	 AG	18689-18813	GT	AGG
(TAT)	 AG	18900-18997	GT	ACG
(ATG)	 AG	19277-19439	GG	ATG
(GGC)	 AG	21015-21038	AC	GAA
-recovered CodingQuarry_transcript_25720-T1, initial, 16083, 16184
-recovered CodingQuarry_transcript_25720-T1, terminal, 21015, 21038
-recovered CodingQuarry_transcript_25720-T1, internal, 18292, 18463
-recovered CodingQuarry_transcript_25720-T1, internal, 18689, 18813
-recovered CodingQuarry_transcript_25720-T1, internal, 18900, 18997
Couldn't classify 63814, 64286
Couldn't classify 64436, 64514
Sorry, prediction pasa_asmbl_21499.p1 fails validation.
(TCG)	 AG	63814-64286	GT	GGG
(GAT)	 AG	64436-64514	CG	TGC
-recovered pasa_asmbl_21499.p1, internal, 63814, 64286
Couldn't classify 184259, 184312
Sorry, prediction pasa_asmbl_21517.p1 fails validation.
(ATG)	 GG	181125-181132	GT	GGG
(GTT)	 AG	181485-181659	GT	AGG
(TTC)	 AG	183480-183552	GT	ACG
(ACC)	 AG	183667-183790	GT	AGG
(GCT)	 AG	183874-184072	GT	AGG
(GTA)	 AG	184259-184312	GT	ACG
-recovered pasa_asmbl_21517.p1, initial, 181125, 181132
-recovered pasa_asmbl_21517.p1, internal, 181485, 181659
-recovered pasa_asmbl_21517.p1, internal, 183480, 183552
-recovered pasa_asmbl_21517.p1, internal, 183667, 183790
-recovered pasa_asmbl_21517.p1, internal, 183874, 184072
-recovered pasa_asmbl_21517.p1, internal, 184259, 184312
Couldn't classify 186208, 186550
Couldn't classify 186718, 186818
Sorry, prediction pasa_asmbl_21520.p1 fails validation.
(GGG)	 CA	186208-186550	GT	AGG
(GCT)	 AG	186718-186818	GG	GCG
Valid prediction for snap_scaffold_19-snap.1609-T1
Couldn't classify 184379, 184384
Couldn't classify 185573, 185679
Sorry, prediction pasa_asmbl_21519.p1 fails validation.
(TAC)	 CG	184379-184384	GT	AGG
(ACC)	 AG	184470-184568	GT	AGG
(GAC)	 AG	184649-184734	GT	AGG
(TCT)	 AG	185211-185260	GT	GGG
(GCC)	 AG	185344-185412	GT	TGG
(CCC)	 AG	185573-185679	CA	CCC
-recovered pasa_asmbl_21519.p1, internal, 184470, 184568
-recovered pasa_asmbl_21519.p1, internal, 184649, 184734
-recovered pasa_asmbl_21519.p1, internal, 185211, 185260
-recovered pasa_asmbl_21519.p1, internal, 185344, 185412
Valid prediction for CodingQuarry_transcript_25728-T1
Valid prediction for GlimmerHMM_glimmerT_44457-T1
Valid prediction for Augustus_model.g29485.t1
Valid prediction for HiQ_model.g29496.t1
Valid prediction for CodingQuarry_transcript_25735-T1
Valid prediction for GlimmerHMM_glimmerT_44463-T1
Valid prediction for CodingQuarry_transcript_25731-T1
Valid prediction for Augustus_model.g29492.t1
Valid prediction for HiQ_model.g29493.t1
Valid prediction for GlimmerHMM_glimmerT_44439-T1
Valid prediction for GlimmerHMM_glimmerT_44461-T1
Valid prediction for Augustus_model.g29500.t1
Valid prediction for snap_scaffold_19-snap.1603-T1
Valid prediction for GlimmerHMM_glimmerT_44438-T1
Valid prediction for pasa_asmbl_21497.p1
Valid prediction for Augustus_model.g29488.t1
Valid prediction for snap_scaffold_19-snap.1585-T1
Valid prediction for CodingQuarry_transcript_25734-T1
Valid prediction for GlimmerHMM_glimmerT_44440-T1
Couldn't classify 37055, 37120
Couldn't classify 37214, 37255
Sorry, prediction CodingQuarry_transcript_25721-T1 fails validation.
(ATG)	 CC	36432-36467	GT	AGG
(ATT)	 AG	36633-36722	GT	AGG
(CTG)	 AG	36866-36939	GT	AGG
(GTG)	 AG	37055-37120	AT	CAA
(ATC)	 AC	37214-37255	GT	TGG
(GGC)	 AG	37372-37426	GT	ATG
(GCA)	 AG	37559-37662	GT	AAG
(TCG)	 AG	38235-38310	GT	AGG
(ATC)	 AG	38584-38725	GC	AGG
(CGG)	 AG	38843-38943	GT	TGG
(GGT)	 AG	39108-39181	GT	AGG
(CGA)	 AG	39465-39590	GT	GTG
(GTA)	 AG	39762-39885	GT	TGG
(GGT)	 AG	39991-40080	CG	AGC
-recovered CodingQuarry_transcript_25721-T1, initial, 36432, 36467
add_exon() Sorry, CodingQuarry_transcript_25721-T1 36866-36939-terminal-2 is invalid.
-recovered CodingQuarry_transcript_25721-T1, terminal, 36866, 36939
-recovered CodingQuarry_transcript_25721-T1, terminal, 39991, 40080
-recovered CodingQuarry_transcript_25721-T1, internal, 36633, 36722
-recovered CodingQuarry_transcript_25721-T1, internal, 36866, 36939
-recovered CodingQuarry_transcript_25721-T1, internal, 37372, 37426
-recovered CodingQuarry_transcript_25721-T1, internal, 37559, 37662
-recovered CodingQuarry_transcript_25721-T1, internal, 38235, 38310
-recovered CodingQuarry_transcript_25721-T1, internal, 38584, 38725
-recovered CodingQuarry_transcript_25721-T1, internal, 38843, 38943
-recovered CodingQuarry_transcript_25721-T1, internal, 39108, 39181
-recovered CodingQuarry_transcript_25721-T1, internal, 39465, 39590
-recovered CodingQuarry_transcript_25721-T1, internal, 39762, 39885
Valid prediction for GlimmerHMM_glimmerT_44460-T1
Valid prediction for pasa_asmbl_21516.p1
Valid prediction for pasa_asmbl_21513.p1
Valid prediction for Augustus_model.g29487.t1
Valid prediction for GlimmerHMM_glimmerT_44466-T1
Valid prediction for GlimmerHMM_glimmerT_44458-T1
Valid prediction for snap_scaffold_19-snap.1588-T1
Valid prediction for GlimmerHMM_glimmerT_44453-T1
Valid prediction for GlimmerHMM_glimmerT_44452-T1
Couldn't classify 37055, 37120
Couldn't classify 37214, 37255
Sorry, prediction pasa_asmbl_21946.p1 fails validation.
(ATG)	 CC	36432-36467	GT	AGG
(ATT)	 AG	36633-36722	GT	AGG
(CTG)	 AG	36866-36939	GT	AGG
(GTG)	 AG	37055-37120	AT	CAA
(ATC)	 AC	37214-37255	GT	TGG
(GGC)	 AG	37372-37426	GT	ATG
(GCA)	 AG	37559-37662	GT	AAG
(TCG)	 AG	38235-38310	GT	AGG
(ATC)	 AG	38584-38725	GC	AGG
(CGG)	 AG	38843-38943	GT	TGG
(GGT)	 AG	39108-39181	GT	AGG
(CGA)	 AG	39465-39590	GT	GTG
(GTA)	 AG	39762-39885	GT	TGG
(GGT)	 AG	39991-40080	CG	AGC
-recovered pasa_asmbl_21946.p1, initial, 36432, 36467
add_exon() Sorry, pasa_asmbl_21946.p1 36866-36939-terminal-2 is invalid.
-recovered pasa_asmbl_21946.p1, terminal, 36866, 36939
-recovered pasa_asmbl_21946.p1, terminal, 39991, 40080
-recovered pasa_asmbl_21946.p1, internal, 36633, 36722
-recovered pasa_asmbl_21946.p1, internal, 36866, 36939
-recovered pasa_asmbl_21946.p1, internal, 37372, 37426
-recovered pasa_asmbl_21946.p1, internal, 37559, 37662
-recovered pasa_asmbl_21946.p1, internal, 38235, 38310
-recovered pasa_asmbl_21946.p1, internal, 38584, 38725
-recovered pasa_asmbl_21946.p1, internal, 38843, 38943
-recovered pasa_asmbl_21946.p1, internal, 39108, 39181
-recovered pasa_asmbl_21946.p1, internal, 39465, 39590
-recovered pasa_asmbl_21946.p1, internal, 39762, 39885
Valid prediction for snap_scaffold_19-snap.1607-T1
Valid prediction for snap_scaffold_19-snap.1575-T1
Valid prediction for CodingQuarry_transcript_25719-T1
Valid prediction for snap_scaffold_19-snap.1602-T1
Valid prediction for snap_scaffold_19-snap.1601-T1
Valid prediction for GlimmerHMM_glimmerT_44442-T1
Valid prediction for snap_scaffold_19-snap.1586-T1
Valid prediction for GlimmerHMM_glimmerT_44467-T1
Couldn't classify 64787, 64996
Sorry, prediction pasa_asmbl_21500.p1 fails validation.
(CCC)	 AG	64787-64996	GT	TGG
(GTC)	 AG	65179-65227	GT	AGG
(GTT)	 AG	65503-65699	GT	ACG
(CAC)	 AG	65853-65941	GT	AAG
(GGT)	 AG	66025-66139	CT	GAC
-recovered pasa_asmbl_21500.p1, terminal, 66025, 66139
-recovered pasa_asmbl_21500.p1, internal, 64787, 64996
-recovered pasa_asmbl_21500.p1, internal, 65179, 65227
-recovered pasa_asmbl_21500.p1, internal, 65503, 65699
-recovered pasa_asmbl_21500.p1, internal, 65853, 65941
Valid prediction for HiQ_model.g29473.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for HiQ_model.g29481.t1
Couldn't classify 136939, 136971
Couldn't classify 138224, 138262
Sorry, prediction pasa_asmbl_22292.p1 fails validation.
(CCC)	 TG	136939-136971	GT	AGG
(CCT)	 AG	137096-137284	GT	AGG
(GGT)	 AG	137530-137671	GT	AGG
(AGC)	 AG	137959-138104	GT	AGG
(CAG)	 AG	138224-138262	GC	TCG
-recovered pasa_asmbl_22292.p1, internal, 137096, 137284
-recovered pasa_asmbl_22292.p1, internal, 137530, 137671
-recovered pasa_asmbl_22292.p1, internal, 137959, 138104
-recovered pasa_asmbl_22292.p1, internal, 138224, 138262
Valid prediction for Augustus_model.g29479.t1
Valid prediction for snap_scaffold_19-snap.1590-T1
Valid prediction for GlimmerHMM_glimmerT_44454-T1
Valid prediction for GlimmerHMM_glimmerT_44447-T1
Valid prediction for CodingQuarry_transcript_25725-T1
Valid prediction for snap_scaffold_19-snap.1584-T1
Valid prediction for pasa_asmbl_22279.p1
Valid prediction for snap_scaffold_19-snap.1594-T1
Valid prediction for snap_scaffold_19-snap.1595-T1
Couldn't classify 114815, 114904
Couldn't classify 115056, 115292
Sorry, prediction pasa_asmbl_22676.p1 fails validation.
(GCC)	 GA	114815-114904	GT	ATG
(TTG)	 AG	115056-115292	GT	GGG
-recovered pasa_asmbl_22676.p1, internal, 115056, 115292
Valid prediction for pasa_asmbl_22295.p1
Valid prediction for Augustus_model.g29498.t1
Valid prediction for Augustus_model.g29480.t1
Valid prediction for GlimmerHMM_glimmerT_44449-T1
Valid prediction for pasa_asmbl_22287.p1
Valid prediction for snap_scaffold_19-snap.1591-T1
Valid prediction for snap_scaffold_19-snap.1597-T1
Valid prediction for snap_scaffold_19-snap.1592-T1
Valid prediction for GlimmerHMM_glimmerT_44444-T1
Valid prediction for Augustus_model.g29489.t1
Valid prediction for snap_scaffold_19-snap.1571-T1
Couldn't classify 118667, 118697
Sorry, prediction pasa_asmbl_22293.p1 fails validation.
(GAG)	 AG	118667-118697	GT	GAG
(TCC)	 AG	118858-119008	GT	AGG
(GTC)	 AG	119119-119193	GT	CTG
(GTG)	 AG	119296-119464	GG	AGG
-recovered pasa_asmbl_22293.p1, terminal, 119296, 119464
-recovered pasa_asmbl_22293.p1, internal, 118667, 118697
-recovered pasa_asmbl_22293.p1, internal, 118858, 119008
-recovered pasa_asmbl_22293.p1, internal, 119119, 119193
Valid prediction for Augustus_model.g29499.t1
Valid prediction for GlimmerHMM_glimmerT_44462-T1
Valid prediction for GlimmerHMM_glimmerT_44469-T1
Valid prediction for GlimmerHMM_glimmerT_44436-T1
Valid prediction for snap_scaffold_19-snap.1610-T1
Valid prediction for snap_scaffold_19-snap.1600-T1
Valid prediction for snap_scaffold_19-snap.1608-T1
Valid prediction for snap_scaffold_19-snap.1606-T1
Valid prediction for CodingQuarry_transcript_25723-T1
Valid prediction for Augustus_model.g29477.t1
Valid prediction for snap_scaffold_19-snap.1582-T1
Valid prediction for snap_scaffold_19-snap.1574-T1
Valid prediction for pasa_asmbl_22284.p1
Valid prediction for snap_scaffold_19-snap.1576-T1
Valid prediction for snap_scaffold_19-snap.1599-T1
Valid prediction for snap_scaffold_19-snap.1605-T1
Valid prediction for CodingQuarry_transcript_25724-T1
Valid prediction for snap_scaffold_19-snap.1577-T1
Valid prediction for snap_scaffold_19-snap.1579-T1
Valid prediction for Augustus_model.g29472.t1
Valid prediction for HiQ_model.g29494.t1
Valid prediction for snap_scaffold_19-snap.1581-T1
Valid prediction for GlimmerHMM_glimmerT_44446-T1
Valid prediction for pasa_asmbl_22297.p1
Valid prediction for Augustus_model.g29478.t1
Valid prediction for GlimmerHMM_glimmerT_44448-T1
Valid prediction for GlimmerHMM_glimmerT_44441-T1
Valid prediction for GlimmerHMM_glimmerT_44465-T1
Valid prediction for Augustus_model.g29476.t1
Valid prediction for Augustus_model.g29486.t1
Valid prediction for GlimmerHMM_glimmerT_44459-T1
Valid prediction for GlimmerHMM_glimmerT_44445-T1
Valid prediction for GlimmerHMM_glimmerT_44451-T1
Valid prediction for Augustus_model.g29474.t1
Valid prediction for snap_scaffold_19-snap.1578-T1
Valid prediction for snap_scaffold_19-snap.1596-T1
Couldn't classify 115628, 115709
Couldn't classify 116137, 116259
Sorry, prediction pasa_asmbl_22690.p1 fails validation.
(CAC)	 TC	115628-115709	GT	GGG
(GGT)	 AG	115869-116005	GT	AAG
(GTG)	 AG	116137-116259	AC	GCA
-recovered pasa_asmbl_22690.p1, internal, 115869, 116005
Valid prediction for snap_scaffold_19-snap.1580-T1
Valid prediction for snap_scaffold_19-snap.1587-T1
Valid prediction for Augustus_model.g29483.t1
Valid prediction for Augustus_model.g29491.t1
Valid prediction for GlimmerHMM_glimmerT_44437-T1
Valid prediction for CodingQuarry_transcript_25722-T1
Valid prediction for pasa_asmbl_22282.p1
Valid prediction for CodingQuarry_transcript_25732-T1
Valid prediction for GlimmerHMM_glimmerT_44455-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 40080, rend_intergenic: 37485  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141046, rend_intergenic: 113451  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157384, rend_intergenic: 151831  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162001, rend_intergenic: 159356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187331, rend_intergenic: 181452  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202419, rend_intergenic: 198098  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208543, rend_intergenic: 205925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 220014
-exon list size: 624


building trellis

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33.5    
33.7    
33.9    
34.0    
34.2    
34.3    
34.5    
34.7    
34.8    
35.0    
35.1    
35.3    
35.5    
35.6    
35.8    
35.9    
36.1    
36.3    
36.4    
36.6    
36.7    
36.9    
37.1    
37.2    
37.4    
37.5    
37.7    
37.9    
38.0    
38.2    
38.3    
38.5    
38.7    
38.8    
39.0    
39.1    
39.3    
39.5    
39.6    
39.8    
39.9    
40.1    
40.3    
40.4    
40.6    
40.7    
40.9    
41.1    
41.2    
41.4    
41.5    
41.7    
41.9    
42.0    
42.2    
42.3    
42.5    
42.7    
42.8    
43.0    
43.1    
43.3    
43.5    
43.6    
43.8    
43.9    
44.1    
44.2    
44.4    
44.6    
44.7    
44.9    
45.0    
45.2    
45.4    
45.5    
45.7    
45.8    
46.0    
46.2    
46.3    
46.5    
46.6    
46.8    
47.0    
47.1    
47.3    
47.4    
47.6    
47.8    
47.9    
48.1    
48.2    
48.4    
48.6    
48.7    
48.9    
49.0    
49.2    
49.4    
49.5    
49.7    
49.8    
50.0    
50.2    
50.3    
50.5    
50.6    
50.8    
51.0    
51.1    
51.3    
51.4    
51.6    
51.8    
51.9    
52.1    
52.2    
52.4    
52.6    
52.7    
52.9    
53.0    
53.2    
53.4    
53.5    
53.7    
53.8    
54.0    
54.2    
54.3    
54.5    
54.6    
54.8    
55.0    
55.1    
55.3    
55.4    
55.6    
55.8    
55.9    
56.1    
56.2    
56.4    
56.5    
56.7    
56.9    
57.0    
57.2    
57.3    
57.5    
57.7    
57.8    
58.0    
58.1    
58.3    
58.5    
58.6    
58.8    
58.9    
59.1    
59.3    
59.4    
59.6    
59.7    
59.9    
60.1    
60.2    
60.4    
60.5    
60.7    
60.9    
61.0    
61.2    
61.3    
61.5    
61.7    
61.8    
62.0    
62.1    
62.3    
62.5    
62.6    
62.8    
62.9    
63.1    
63.3    
63.4    
63.6    
63.7    
63.9    
64.1    
64.2    
64.4    
64.5    
64.7    
64.9    
65.0    
65.2    
65.3    
65.5    
65.7    
65.8    
66.0    
66.1    
66.3    
66.5    
66.6    
66.8    
66.9    
67.1    
67.3    
67.4    
67.6    
67.7    
67.9    
68.1    
68.2    
68.4    
68.5    
68.7    
68.8    
69.0    
69.2    
69.3    
69.5    
69.6    
69.8    
70.0    
70.1    
70.3    
70.4    
70.6    
70.8    
70.9    
71.1    
71.2    
71.4    
71.6    
71.7    
71.9    
72.0    
72.2    
72.4    
72.5    
72.7    
72.8    
73.0    
73.2    
73.3    
73.5    
73.6    
73.8    
74.0    
74.1    
74.3    
74.4    
74.6    
74.8    
74.9    
75.1    
75.2    
75.4    
75.6    
75.7    
75.9    
76.0    
76.2    
76.4    
76.5    
76.7    
76.8    
77.0    
77.2    
77.3    
77.5    
77.6    
77.8    
78.0    
78.1    
78.3    
78.4    
78.6    
78.8    
78.9    
79.1    
79.2    
79.4    
79.6    
79.7    
79.9    
80.0    
80.2    
80.4    
80.5    
80.7    
80.8    
81.0    
81.2    
81.3    
81.5    
81.6    
81.8    
81.9    
82.1    
82.3    
82.4    
82.6    
82.7    
82.9    
83.1    
83.2    
83.4    
83.5    
83.7    
83.9    
84.0    
84.2    
84.3    
84.5    
84.7    
84.8    
85.0    
85.1    
85.3    
85.5    
85.6    
85.8    
85.9    
86.1    
86.3    
86.4    
86.6    
86.7    
86.9    
87.1    
87.2    
87.4    
87.5    
87.7    
87.9    
88.0    
88.2    
88.3    
88.5    
88.7    
88.8    
89.0    
89.1    
89.3    
89.5    
89.6    
89.8    
89.9    
90.1    
90.3    
90.4    
90.6    
90.7    
90.9    
91.1    
91.2    
91.4    
91.5    
91.7    
91.9    
92.0    
92.2    
92.3    
92.5    
92.7    
92.8    
93.0    
93.1    
93.3    
93.5    
93.6    
93.8    
93.9    
94.1    
94.2    
94.4    
94.6    
94.7    
94.9    
95.0    
95.2    
95.4    
95.5    
95.7    
95.8    
96.0    
96.2    
96.3    
96.5    
96.6    
96.8    
97.0    
97.1    
97.3    
97.4    
97.6    
97.8    
97.9    
98.1    
98.2    
98.4    
98.6    
98.7    
98.9    
99.0    
99.2    
99.4    
99.5    
99.7    
99.8    
-found 34 predictions from path traversal
Error with prediction: snap lend_intergenic: 40080, rend_intergenic: 37485  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141046, rend_intergenic: 113451  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157384, rend_intergenic: 151831  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162001, rend_intergenic: 159356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187331, rend_intergenic: 181452  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202419, rend_intergenic: 198098  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208543, rend_intergenic: 205925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 33 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10450
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support