-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_19/scaffold_19_4429880-4624859

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_19-snap.971-T1
Valid prediction for GlimmerHMM_glimmerT_44003-T1
Valid prediction for GlimmerHMM_glimmerT_44009-T1
Valid prediction for Augustus_model.g29166.t1
Valid prediction for snap_scaffold_19-snap.947-T1
Valid prediction for snap_scaffold_19-snap.954-T1
Valid prediction for snap_scaffold_19-snap.950-T1
Valid prediction for snap_scaffold_19-snap.963-T1
Valid prediction for GlimmerHMM_glimmerT_43996-T1
Valid prediction for GlimmerHMM_glimmerT_44010-T1
Valid prediction for Augustus_model.g29163.t1
Valid prediction for GlimmerHMM_glimmerT_44004-T1
Valid prediction for Augustus_model.g29164.t1
Valid prediction for snap_scaffold_19-snap.965-T1
Valid prediction for snap_scaffold_19-snap.969-T1
Valid prediction for snap_scaffold_19-snap.960-T1
Valid prediction for snap_scaffold_19-snap.957-T1
Valid prediction for GlimmerHMM_glimmerT_44005-T1
Valid prediction for snap_scaffold_19-snap.940-T1
Valid prediction for snap_scaffold_19-snap.955-T1
Valid prediction for GlimmerHMM_glimmerT_44006-T1
Valid prediction for snap_scaffold_19-snap.951-T1
Valid prediction for GlimmerHMM_glimmerT_43999-T1
Valid prediction for GlimmerHMM_glimmerT_44002-T1
Valid prediction for Augustus_model.g29168.t1
Valid prediction for snap_scaffold_19-snap.962-T1
Valid prediction for snap_scaffold_19-snap.964-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_19-snap.945-T1
Valid prediction for snap_scaffold_19-snap.956-T1
Valid prediction for GlimmerHMM_glimmerT_44001-T1
Valid prediction for snap_scaffold_19-snap.967-T1
Valid prediction for snap_scaffold_19-snap.972-T1
Valid prediction for snap_scaffold_19-snap.961-T1
Valid prediction for snap_scaffold_19-snap.959-T1
Valid prediction for snap_scaffold_19-snap.946-T1
Valid prediction for snap_scaffold_19-snap.943-T1
Valid prediction for snap_scaffold_19-snap.966-T1
Valid prediction for GlimmerHMM_glimmerT_44008-T1
Valid prediction for Augustus_model.g29165.t1
Valid prediction for GlimmerHMM_glimmerT_44011-T1
Valid prediction for GlimmerHMM_glimmerT_43993-T1
Valid prediction for Augustus_model.g29167.t1
Valid prediction for GlimmerHMM_glimmerT_43998-T1
Valid prediction for snap_scaffold_19-snap.970-T1
Valid prediction for snap_scaffold_19-snap.958-T1
Valid prediction for GlimmerHMM_glimmerT_43991-T1
Valid prediction for GlimmerHMM_glimmerT_43992-T1
Valid prediction for GlimmerHMM_glimmerT_43997-T1
Valid prediction for snap_scaffold_19-snap.939-T1
Valid prediction for snap_scaffold_19-snap.949-T1
Valid prediction for snap_scaffold_19-snap.953-T1
Valid prediction for snap_scaffold_19-snap.941-T1
Valid prediction for GlimmerHMM_glimmerT_43995-T1
Valid prediction for GlimmerHMM_glimmerT_43994-T1
Valid prediction for snap_scaffold_19-snap.948-T1
Valid prediction for Augustus_model.g29169.t1
Valid prediction for snap_scaffold_19-snap.968-T1
Valid prediction for snap_scaffold_19-snap.944-T1
Valid prediction for snap_scaffold_19-snap.952-T1
Valid prediction for GlimmerHMM_glimmerT_44007-T1
Valid prediction for GlimmerHMM_glimmerT_44000-T1
Valid prediction for snap_scaffold_19-snap.942-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 38843, rend_intergenic: 32218  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52866, rend_intergenic: 46192  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65304, rend_intergenic: 64327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80175, rend_intergenic: 75241  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186391, rend_intergenic: 179127  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 194980
-exon list size: 179


building trellis

0.6    
1.1    
1.7    
2.2    
2.8    
3.3    
3.9    
4.4    
5.0    
5.5    
6.1    
6.6    
7.2    
7.7    
8.3    
8.8    
9.4    
9.9    
10.5    
11.0    
11.6    
12.2    
12.7    
13.3    
13.8    
14.4    
14.9    
15.5    
16.0    
16.6    
17.1    
17.7    
18.2    
18.8    
19.3    
19.9    
20.4    
21.0    
21.5    
22.1    
22.7    
23.2    
23.8    
24.3    
24.9    
25.4    
26.0    
26.5    
27.1    
27.6    
28.2    
28.7    
29.3    
29.8    
30.4    
30.9    
31.5    
32.0    
32.6    
33.1    
33.7    
34.3    
34.8    
35.4    
35.9    
36.5    
37.0    
37.6    
38.1    
38.7    
39.2    
39.8    
40.3    
40.9    
41.4    
42.0    
42.5    
43.1    
43.6    
44.2    
44.8    
45.3    
45.9    
46.4    
47.0    
47.5    
48.1    
48.6    
49.2    
49.7    
50.3    
50.8    
51.4    
51.9    
52.5    
53.0    
53.6    
54.1    
54.7    
55.2    
55.8    
56.4    
56.9    
57.5    
58.0    
58.6    
59.1    
59.7    
60.2    
60.8    
61.3    
61.9    
62.4    
63.0    
63.5    
64.1    
64.6    
65.2    
65.7    
66.3    
66.9    
67.4    
68.0    
68.5    
69.1    
69.6    
70.2    
70.7    
71.3    
71.8    
72.4    
72.9    
73.5    
74.0    
74.6    
75.1    
75.7    
76.2    
76.8    
77.3    
77.9    
78.5    
79.0    
79.6    
80.1    
80.7    
81.2    
81.8    
82.3    
82.9    
83.4    
84.0    
84.5    
85.1    
85.6    
86.2    
86.7    
87.3    
87.8    
88.4    
89.0    
89.5    
90.1    
90.6    
91.2    
91.7    
92.3    
92.8    
93.4    
93.9    
94.5    
95.0    
95.6    
96.1    
96.7    
97.2    
97.8    
98.3    
98.9    
99.4    
-found 23 predictions from path traversal
Error with prediction: snap lend_intergenic: 38843, rend_intergenic: 32218  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52866, rend_intergenic: 46192  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65304, rend_intergenic: 64327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80175, rend_intergenic: 75241  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186391, rend_intergenic: 179127  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 181017 - 194980
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support