-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_19/scaffold_19_3828978-4028461

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_43929-T1
Valid prediction for snap_scaffold_19-snap.831-T1
Valid prediction for snap_scaffold_19-snap.848-T1
Valid prediction for Augustus_model.g29138.t1
Valid prediction for snap_scaffold_19-snap.820-T1
Valid prediction for snap_scaffold_19-snap.824-T1
Valid prediction for Augustus_model.g29130.t1
Valid prediction for GlimmerHMM_glimmerT_43918-T1
Valid prediction for snap_scaffold_19-snap.801-T1
Valid prediction for Augustus_model.g29132.t1
Valid prediction for GlimmerHMM_glimmerT_43921-T1
Valid prediction for snap_scaffold_19-snap.815-T1
Valid prediction for snap_scaffold_19-snap.829-T1
Valid prediction for GlimmerHMM_glimmerT_43919-T1
Valid prediction for snap_scaffold_19-snap.837-T1
Valid prediction for snap_scaffold_19-snap.817-T1
Valid prediction for Augustus_model.g29137.t1
Valid prediction for snap_scaffold_19-snap.836-T1
Valid prediction for Augustus_model.g29131.t1
Valid prediction for snap_scaffold_19-snap.805-T1
Valid prediction for GlimmerHMM_glimmerT_43934-T1
Valid prediction for snap_scaffold_19-snap.845-T1
Valid prediction for Augustus_model.g29140.t1
Valid prediction for snap_scaffold_19-snap.822-T1
Valid prediction for snap_scaffold_19-snap.804-T1
Valid prediction for snap_scaffold_19-snap.846-T1
Valid prediction for snap_scaffold_19-snap.812-T1
Valid prediction for snap_scaffold_19-snap.834-T1
Valid prediction for GlimmerHMM_glimmerT_43922-T1
Valid prediction for GlimmerHMM_glimmerT_43910-T1
Valid prediction for snap_scaffold_19-snap.839-T1
Valid prediction for snap_scaffold_19-snap.840-T1
Valid prediction for Augustus_model.g29136.t1
Valid prediction for Augustus_model.g29133.t1
Valid prediction for GlimmerHMM_glimmerT_43924-T1
Valid prediction for GlimmerHMM_glimmerT_43923-T1
Valid prediction for GlimmerHMM_glimmerT_43932-T1
Valid prediction for GlimmerHMM_glimmerT_43914-T1
Valid prediction for snap_scaffold_19-snap.808-T1
Valid prediction for GlimmerHMM_glimmerT_43916-T1
Valid prediction for Augustus_model.g29139.t1
Valid prediction for GlimmerHMM_glimmerT_43912-T1
Valid prediction for snap_scaffold_19-snap.843-T1
Valid prediction for snap_scaffold_19-snap.827-T1
Valid prediction for Augustus_model.g29135.t1
Valid prediction for GlimmerHMM_glimmerT_43926-T1
Valid prediction for GlimmerHMM_glimmerT_43928-T1
Valid prediction for snap_scaffold_19-snap.809-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_19-snap.842-T1
Valid prediction for GlimmerHMM_glimmerT_43935-T1
Valid prediction for snap_scaffold_19-snap.832-T1
Valid prediction for snap_scaffold_19-snap.810-T1
Valid prediction for GlimmerHMM_glimmerT_43930-T1
Valid prediction for Augustus_model.g29142.t1
Valid prediction for Augustus_model.g29141.t1
Valid prediction for snap_scaffold_19-snap.830-T1
Valid prediction for snap_scaffold_19-snap.821-T1
Valid prediction for GlimmerHMM_glimmerT_43931-T1
Valid prediction for snap_scaffold_19-snap.835-T1
Valid prediction for Augustus_model.g29134.t1
Valid prediction for snap_scaffold_19-snap.826-T1
Valid prediction for snap_scaffold_19-snap.816-T1
Valid prediction for GlimmerHMM_glimmerT_43920-T1
Valid prediction for snap_scaffold_19-snap.825-T1
Valid prediction for snap_scaffold_19-snap.841-T1
Valid prediction for snap_scaffold_19-snap.819-T1
Valid prediction for snap_scaffold_19-snap.847-T1
Valid prediction for GlimmerHMM_glimmerT_43927-T1
Valid prediction for GlimmerHMM_glimmerT_43915-T1
Valid prediction for GlimmerHMM_glimmerT_43917-T1
Valid prediction for snap_scaffold_19-snap.833-T1
Valid prediction for snap_scaffold_19-snap.803-T1
Valid prediction for GlimmerHMM_glimmerT_43911-T1
Valid prediction for snap_scaffold_19-snap.844-T1
Valid prediction for snap_scaffold_19-snap.828-T1
Valid prediction for snap_scaffold_19-snap.807-T1
Valid prediction for snap_scaffold_19-snap.823-T1
Valid prediction for snap_scaffold_19-snap.813-T1
Valid prediction for GlimmerHMM_glimmerT_43933-T1
Valid prediction for GlimmerHMM_glimmerT_43925-T1
Valid prediction for snap_scaffold_19-snap.838-T1
Valid prediction for GlimmerHMM_glimmerT_43913-T1
Valid prediction for snap_scaffold_19-snap.818-T1
Valid prediction for snap_scaffold_19-snap.811-T1
Valid prediction for snap_scaffold_19-snap.814-T1
Valid prediction for snap_scaffold_19-snap.806-T1
Valid prediction for snap_scaffold_19-snap.802-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 39517, rend_intergenic: 29970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43613, rend_intergenic: 40512  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53173, rend_intergenic: 50382  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60082, rend_intergenic: 58359  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62000, rend_intergenic: 60297  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71889, rend_intergenic: 63328  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73730, rend_intergenic: 72170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74917, rend_intergenic: 73783  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88753, rend_intergenic: 82796  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89814, rend_intergenic: 89539  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95201, rend_intergenic: 94115  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97372, rend_intergenic: 95883  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105522, rend_intergenic: 98428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110389, rend_intergenic: 108050  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118674, rend_intergenic: 111502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124495, rend_intergenic: 119041  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131754, rend_intergenic: 130069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143206, rend_intergenic: 138413  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160789, rend_intergenic: 146939  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163755, rend_intergenic: 161908  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171860, rend_intergenic: 166453  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179219, rend_intergenic: 174418  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 193654, rend_intergenic: 179266  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194100, rend_intergenic: 193718  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196325, rend_intergenic: 194331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 199484
-exon list size: 311


building trellis

0.3    
0.6    
1.0    
1.3    
1.6    
1.9    
2.2    
2.6    
2.9    
3.2    
3.5    
3.8    
4.2    
4.5    
4.8    
5.1    
5.4    
5.8    
6.1    
6.4    
6.7    
7.0    
7.3    
7.7    
8.0    
8.3    
8.6    
8.9    
9.3    
9.6    
9.9    
10.2    
10.5    
10.9    
11.2    
11.5    
11.8    
12.1    
12.5    
12.8    
13.1    
13.4    
13.7    
14.1    
14.4    
14.7    
15.0    
15.3    
15.7    
16.0    
16.3    
16.6    
16.9    
17.3    
17.6    
17.9    
18.2    
18.5    
18.8    
19.2    
19.5    
19.8    
20.1    
20.4    
20.8    
21.1    
21.4    
21.7    
22.0    
22.4    
22.7    
23.0    
23.3    
23.6    
24.0    
24.3    
24.6    
24.9    
25.2    
25.6    
25.9    
26.2    
26.5    
26.8    
27.2    
27.5    
27.8    
28.1    
28.4    
28.8    
29.1    
29.4    
29.7    
30.0    
30.4    
30.7    
31.0    
31.3    
31.6    
31.9    
32.3    
32.6    
32.9    
33.2    
33.5    
33.9    
34.2    
34.5    
34.8    
35.1    
35.5    
35.8    
36.1    
36.4    
36.7    
37.1    
37.4    
37.7    
38.0    
38.3    
38.7    
39.0    
39.3    
39.6    
39.9    
40.3    
40.6    
40.9    
41.2    
41.5    
41.9    
42.2    
42.5    
42.8    
43.1    
43.5    
43.8    
44.1    
44.4    
44.7    
45.0    
45.4    
45.7    
46.0    
46.3    
46.6    
47.0    
47.3    
47.6    
47.9    
48.2    
48.6    
48.9    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.1    
51.4    
51.8    
52.1    
52.4    
52.7    
53.0    
53.4    
53.7    
54.0    
54.3    
54.6    
55.0    
55.3    
55.6    
55.9    
56.2    
56.5    
56.9    
57.2    
57.5    
57.8    
58.1    
58.5    
58.8    
59.1    
59.4    
59.7    
60.1    
60.4    
60.7    
61.0    
61.3    
61.7    
62.0    
62.3    
62.6    
62.9    
63.3    
63.6    
63.9    
64.2    
64.5    
64.9    
65.2    
65.5    
65.8    
66.1    
66.5    
66.8    
67.1    
67.4    
67.7    
68.1    
68.4    
68.7    
69.0    
69.3    
69.6    
70.0    
70.3    
70.6    
70.9    
71.2    
71.6    
71.9    
72.2    
72.5    
72.8    
73.2    
73.5    
73.8    
74.1    
74.4    
74.8    
75.1    
75.4    
75.7    
76.0    
76.4    
76.7    
77.0    
77.3    
77.6    
78.0    
78.3    
78.6    
78.9    
79.2    
79.6    
79.9    
80.2    
80.5    
80.8    
81.2    
81.5    
81.8    
82.1    
82.4    
82.7    
83.1    
83.4    
83.7    
84.0    
84.3    
84.7    
85.0    
85.3    
85.6    
85.9    
86.3    
86.6    
86.9    
87.2    
87.5    
87.9    
88.2    
88.5    
88.8    
89.1    
89.5    
89.8    
90.1    
90.4    
90.7    
91.1    
91.4    
91.7    
92.0    
92.3    
92.7    
93.0    
93.3    
93.6    
93.9    
94.2    
94.6    
94.9    
95.2    
95.5    
95.8    
96.2    
96.5    
96.8    
97.1    
97.4    
97.8    
98.1    
98.4    
98.7    
99.0    
99.4    
99.7    
-found 33 predictions from path traversal
Error with prediction: snap lend_intergenic: 39517, rend_intergenic: 29970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43613, rend_intergenic: 40512  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53173, rend_intergenic: 50382  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60082, rend_intergenic: 58359  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62000, rend_intergenic: 60297  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71889, rend_intergenic: 63328  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73730, rend_intergenic: 72170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74917, rend_intergenic: 73783  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88753, rend_intergenic: 82796  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89814, rend_intergenic: 89539  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95201, rend_intergenic: 94115  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97372, rend_intergenic: 95883  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105522, rend_intergenic: 98428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110389, rend_intergenic: 108050  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118674, rend_intergenic: 111502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124495, rend_intergenic: 119041  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131754, rend_intergenic: 130069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143206, rend_intergenic: 138413  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160789, rend_intergenic: 146939  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163755, rend_intergenic: 161908  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171860, rend_intergenic: 166453  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179219, rend_intergenic: 174418  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 193654, rend_intergenic: 179266  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194100, rend_intergenic: 193718  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196325, rend_intergenic: 194331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support