-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_19/scaffold_19_2944028-3288287 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_19-snap.654-T1 Valid prediction for snap_scaffold_19-snap.649-T1 Valid prediction for Augustus_model.g29072.t1 Valid prediction for snap_scaffold_19-snap.657-T1 Valid prediction for snap_scaffold_19-snap.677-T1 Valid prediction for GlimmerHMM_glimmerT_43810-T1 Valid prediction for snap_scaffold_19-snap.642-T1 Valid prediction for snap_scaffold_19-snap.685-T1 Couldn't classify 42378, 42452 Sorry, prediction pasa_asmbl_21298.p1 fails validation. (CGC) TG 42378-42452 GT AGG (GGC) AG 42694-42849 GT AGG (AGT) AG 43019-43138 CC GAC -recovered pasa_asmbl_21298.p1, terminal, 43019, 43138 -recovered pasa_asmbl_21298.p1, internal, 42694, 42849 Valid prediction for snap_scaffold_19-snap.634-T1 Valid prediction for GlimmerHMM_glimmerT_43816-T1 Valid prediction for snap_scaffold_19-snap.673-T1 Valid prediction for snap_scaffold_19-snap.647-T1 Valid prediction for snap_scaffold_19-snap.641-T1 Valid prediction for GlimmerHMM_glimmerT_43805-T1 Valid prediction for snap_scaffold_19-snap.661-T1 Valid prediction for HiQ_model.g29086.t1 Valid prediction for snap_scaffold_19-snap.688-T1 Valid prediction for GlimmerHMM_glimmerT_43828-T1 Valid prediction for Augustus_model.g29087.t1 Valid prediction for snap_scaffold_19-snap.655-T1 Valid prediction for GlimmerHMM_glimmerT_43813-T1 Valid prediction for GlimmerHMM_glimmerT_43815-T1 Couldn't classify 251740, 251862 Couldn't classify 257476, 257593 Sorry, prediction pasa_asmbl_21307.p1 fails validation. (GTC) TT 251740-251862 GT AGG (GCT) AG 252481-252618 GT CGG (ATC) AG 254864-254897 GT AGG (ACC) AG 256037-256255 GT AGG (GCC) AG 256758-256990 GT AGG (GAT) AG 257161-257246 GT AGG (GTT) AG 257476-257593 TC AGT -recovered pasa_asmbl_21307.p1, internal, 252481, 252618 -recovered pasa_asmbl_21307.p1, internal, 254864, 254897 -recovered pasa_asmbl_21307.p1, internal, 256037, 256255 -recovered pasa_asmbl_21307.p1, internal, 256758, 256990 -recovered pasa_asmbl_21307.p1, internal, 257161, 257246 Valid prediction for snap_scaffold_19-snap.651-T1 Valid prediction for CodingQuarry_transcript_25621-T1 Valid prediction for snap_scaffold_19-snap.670-T1 Valid prediction for GlimmerHMM_glimmerT_43825-T1 Valid prediction for snap_scaffold_19-snap.640-T1 Valid prediction for HiQ_model.g29088.t1 Valid prediction for Augustus_model.g29073.t1 Valid prediction for Augustus_model.g29077.t1 Couldn't classify 36841, 36965 Couldn't classify 37786, 37873 Sorry, prediction pasa_asmbl_21890.p1 fails validation. (TTG) CA 36841-36965 GT AGG (GGA) AG 37103-37246 GT CGG (GGT) AG 37786-37873 GG TTG -recovered pasa_asmbl_21890.p1, internal, 37103, 37246 Valid prediction for GlimmerHMM_glimmerT_43832-T1 Valid prediction for snap_scaffold_19-snap.668-T1 Valid prediction for snap_scaffold_19-snap.659-T1 Valid prediction for GlimmerHMM_glimmerT_43819-T1 Valid prediction for GlimmerHMM_glimmerT_43812-T1 Valid prediction for snap_scaffold_19-snap.645-T1 Valid prediction for GlimmerHMM_glimmerT_43831-T1 Valid prediction for snap_scaffold_19-snap.682-T1 Valid prediction for snap_scaffold_19-snap.666-T1 Valid prediction for snap_scaffold_19-snap.644-T1 Valid prediction for pasa_asmbl_21309.p1 Couldn't classify 249884, 250243 Sorry, prediction pasa_asmbl_21305.p1 fails validation. (ATG) GC 246999-247013 GT AAG (ATG) AG 247563-247667 GT AGG (ACA) AG 247883-247968 GT AGG (CAC) AG 248462-248647 GT ACG (GTG) AG 248980-249080 GT TGG (ATT) AG 249607-249791 GT AGG (GGT) AG 249884-250243 CA TCC -recovered pasa_asmbl_21305.p1, initial, 246999, 247013 -recovered pasa_asmbl_21305.p1, initial, 247563, 247667 -recovered pasa_asmbl_21305.p1, internal, 247563, 247667 -recovered pasa_asmbl_21305.p1, internal, 247883, 247968 -recovered pasa_asmbl_21305.p1, internal, 248462, 248647 -recovered pasa_asmbl_21305.p1, internal, 248980, 249080 -recovered pasa_asmbl_21305.p1, internal, 249607, 249791 Valid prediction for snap_scaffold_19-snap.675-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for CodingQuarry_transcript_25622-T1 Couldn't classify 88743, 88817 Couldn't classify 90973, 91205 Sorry, prediction pasa_asmbl_21300.p1 fails validation. (TCC) AG 88743-88817 GT AGG (ATT) AG 88925-89041 GT CGG (ACC) AG 89394-89496 GT CTG (TGG) AG 89951-90150 GT TGG (ATG) AG 90582-90666 GT CTG (ACC) AG 90973-91205 GC TTG -recovered pasa_asmbl_21300.p1, initial, 90582, 90666 -recovered pasa_asmbl_21300.p1, internal, 88743, 88817 -recovered pasa_asmbl_21300.p1, internal, 88925, 89041 -recovered pasa_asmbl_21300.p1, internal, 89394, 89496 -recovered pasa_asmbl_21300.p1, internal, 89951, 90150 -recovered pasa_asmbl_21300.p1, internal, 90582, 90666 -recovered pasa_asmbl_21300.p1, internal, 90973, 91205 Valid prediction for snap_scaffold_19-snap.663-T1 Couldn't classify 325091, 325124 Sorry, prediction pasa_asmbl_21314.p1 fails validation. (ACT) CC 325091-325124 GT GGG (CCA) AG 326938-327003 GT GGG (CAA) AG 328156-328230 GT TGG (GGT) AG 329760-329828 GT TGG (ACA) AG 330099-330224 GT TGG (GCA) AG 330370-330459 GT GGG (CTC) AG 330770-330979 GT AGG (AGT) AG 331275-331380 GT AGG (CTA) AG 332248-332327 GT AGG (CGG) AG 333990-334019 GT AGG (GAA) AG 334499-334657 GT CGG (GGA) AG 334782-334904 GT AGG (GTT) AG 335049-335164 GA AAG -recovered pasa_asmbl_21314.p1, terminal, 335049, 335164 -recovered pasa_asmbl_21314.p1, internal, 326938, 327003 -recovered pasa_asmbl_21314.p1, internal, 328156, 328230 -recovered pasa_asmbl_21314.p1, internal, 329760, 329828 -recovered pasa_asmbl_21314.p1, internal, 330099, 330224 -recovered pasa_asmbl_21314.p1, internal, 330370, 330459 -recovered pasa_asmbl_21314.p1, internal, 330770, 330979 -recovered pasa_asmbl_21314.p1, internal, 331275, 331380 -recovered pasa_asmbl_21314.p1, internal, 332248, 332327 -recovered pasa_asmbl_21314.p1, internal, 333990, 334019 -recovered pasa_asmbl_21314.p1, internal, 334499, 334657 -recovered pasa_asmbl_21314.p1, internal, 334782, 334904 Couldn't classify 319527, 319683 Couldn't classify 323118, 323144 Sorry, prediction pasa_asmbl_21313.p1 fails validation. (CGG) TT 319527-319683 GT AGG (ATG) AG 320694-320762 GT AGG (GGA) AG 320854-320986 GT GGG (ACA) AG 321861-322042 GT AGG (ACA) AG 322305-322357 GT TGG (AAA) AG 323118-323144 CC CCC add_exon() Sorry, pasa_asmbl_21313.p1 320694-320762-initial-1 is invalid. -recovered pasa_asmbl_21313.p1, initial, 320694, 320762 -recovered pasa_asmbl_21313.p1, internal, 320694, 320762 -recovered pasa_asmbl_21313.p1, internal, 320854, 320986 -recovered pasa_asmbl_21313.p1, internal, 321861, 322042 -recovered pasa_asmbl_21313.p1, internal, 322305, 322357 Valid prediction for snap_scaffold_19-snap.652-T1 Valid prediction for snap_scaffold_19-snap.674-T1 Valid prediction for Augustus_model.g29074.t1 Valid prediction for snap_scaffold_19-snap.653-T1 Valid prediction for snap_scaffold_19-snap.683-T1 Valid prediction for snap_scaffold_19-snap.648-T1 Couldn't classify 257848, 257969 Sorry, prediction pasa_asmbl_21308.p1 fails validation. (TAT) GG 257848-257969 GT CCG (GCC) AG 259956-260048 GT GAG (AGC) AG 262966-263159 GT AGG (GTT) AG 263673-263719 GT CGG (GAG) AG 263946-263989 GT AGG (ACC) AG 264113-264181 GT GAG (GTA) AG 264354-264504 GT AGG (AAC) AG 265212-265355 CC GAC add_exon() Sorry, pasa_asmbl_21308.p1 259956-260048-terminal-1 is invalid. -recovered pasa_asmbl_21308.p1, terminal, 259956, 260048 -recovered pasa_asmbl_21308.p1, terminal, 265212, 265355 -recovered pasa_asmbl_21308.p1, internal, 259956, 260048 -recovered pasa_asmbl_21308.p1, internal, 262966, 263159 -recovered pasa_asmbl_21308.p1, internal, 263673, 263719 -recovered pasa_asmbl_21308.p1, internal, 263946, 263989 -recovered pasa_asmbl_21308.p1, internal, 264113, 264181 -recovered pasa_asmbl_21308.p1, internal, 264354, 264504 Valid prediction for GlimmerHMM_glimmerT_43803-T1 Valid prediction for snap_scaffold_19-snap.678-T1 Valid prediction for snap_scaffold_19-snap.684-T1 Valid prediction for snap_scaffold_19-snap.639-T1 Valid prediction for GlimmerHMM_glimmerT_43829-T1 Valid prediction for CodingQuarry_transcript_25616-T1 Valid prediction for GlimmerHMM_glimmerT_43807-T1 Valid prediction for snap_scaffold_19-snap.635-T1 Sorry, intron length (5) is less than minimum required (10) -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_43809-T1 Couldn't classify 117530, 118165 Couldn't classify 120622, 120696 Sorry, prediction pasa_asmbl_22084.p1 fails validation. (ACC) GC 117530-118165 GT AGG (ATG) AG 119983-120039 GT AGG (CGT) AG 120622-120696 GA TGG -recovered pasa_asmbl_22084.p1, initial, 119983, 120039 -recovered pasa_asmbl_22084.p1, internal, 119983, 120039 Valid prediction for Augustus_model.g29084.t1 Valid prediction for GlimmerHMM_glimmerT_43822-T1 Valid prediction for CodingQuarry_transcript_25617-T1 Valid prediction for GlimmerHMM_glimmerT_43824-T1 Valid prediction for GlimmerHMM_glimmerT_43806-T1 Valid prediction for GlimmerHMM_glimmerT_43826-T1 Valid prediction for snap_scaffold_19-snap.638-T1 Valid prediction for snap_scaffold_19-snap.672-T1 Valid prediction for HiQ_model.g29078.t1 Valid prediction for GlimmerHMM_glimmerT_43814-T1 Valid prediction for HiQ_model.g29075.t1 Valid prediction for GlimmerHMM_glimmerT_43821-T1 Valid prediction for snap_scaffold_19-snap.687-T1 Valid prediction for snap_scaffold_19-snap.662-T1 Valid prediction for GlimmerHMM_glimmerT_43823-T1 Valid prediction for snap_scaffold_19-snap.679-T1 Valid prediction for snap_scaffold_19-snap.681-T1 Valid prediction for snap_scaffold_19-snap.667-T1 Valid prediction for CodingQuarry_transcript_25620-T1 Valid prediction for GlimmerHMM_glimmerT_43804-T1 Couldn't classify 284337, 284436 Couldn't classify 294646, 294833 Sorry, prediction pasa_asmbl_22080.p1 fails validation. (CTG) GT 284337-284436 GT ACG (TCG) AG 284754-284930 GT GGG (ATC) AG 285019-285144 GT AGG (CTC) AG 285318-285407 GT AGG (GTT) AG 285729-285923 GT AGG (AGG) AG 286973-287251 GT CAG (AGC) AG 287638-287901 GT AAG (CTC) AG 287987-288081 GT AGG (CTG) AG 288182-288350 GT GCG (CTC) AG 288552-288638 GT AGG (ACT) AG 288867-289058 GT AGG (CCG) AG 291142-291333 GT GAG (ACC) AG 291469-291558 GT CAG (CTC) AG 291788-292054 GT CAG (TCT) AG 292395-292511 GT AGG (GTG) AG 292765-292929 GT CGG (AGG) AG 293271-293426 GT CGG (AAC) AG 293597-293713 GT AGG (CCA) AG 293880-294149 GT AGG (CCA) AG 294646-294833 GT TGG -recovered pasa_asmbl_22080.p1, internal, 284754, 284930 -recovered pasa_asmbl_22080.p1, internal, 285019, 285144 -recovered pasa_asmbl_22080.p1, internal, 285318, 285407 -recovered pasa_asmbl_22080.p1, internal, 285729, 285923 -recovered pasa_asmbl_22080.p1, internal, 286973, 287251 -recovered pasa_asmbl_22080.p1, internal, 287638, 287901 -recovered pasa_asmbl_22080.p1, internal, 287987, 288081 -recovered pasa_asmbl_22080.p1, internal, 288182, 288350 -recovered pasa_asmbl_22080.p1, internal, 288552, 288638 -recovered pasa_asmbl_22080.p1, internal, 288867, 289058 -recovered pasa_asmbl_22080.p1, internal, 291142, 291333 -recovered pasa_asmbl_22080.p1, internal, 291469, 291558 -recovered pasa_asmbl_22080.p1, internal, 291788, 292054 -recovered pasa_asmbl_22080.p1, internal, 292395, 292511 -recovered pasa_asmbl_22080.p1, internal, 292765, 292929 -recovered pasa_asmbl_22080.p1, internal, 293271, 293426 -recovered pasa_asmbl_22080.p1, internal, 293597, 293713 -recovered pasa_asmbl_22080.p1, internal, 293880, 294149 -recovered pasa_asmbl_22080.p1, internal, 294646, 294833 Valid prediction for snap_scaffold_19-snap.658-T1 Valid prediction for pasa_asmbl_22091.p1 Valid prediction for GlimmerHMM_glimmerT_43820-T1 Valid prediction for snap_scaffold_19-snap.633-T1 Valid prediction for CodingQuarry_transcript_25615-T1 Valid prediction for snap_scaffold_19-snap.637-T1 Valid prediction for Augustus_model.g29079.t1 Valid prediction for pasa_asmbl_22082.p1 Valid prediction for snap_scaffold_19-snap.665-T1 Valid prediction for Augustus_model.g29076.t1 Valid prediction for Augustus_model.g29071.t1 Valid prediction for snap_scaffold_19-snap.636-T1 Couldn't classify 116558, 117430 Sorry, prediction pasa_asmbl_22085.p1 fails validation. (TCT) AC 116558-117430 CC AGC Valid prediction for Augustus_model.g29083.t1 Couldn't classify 120795, 120864 Couldn't classify 125009, 125547 Sorry, prediction pasa_asmbl_22713.p1 fails validation. (GAC) AG 120795-120864 GT CGG (GTG) AG 122733-123269 GT TGG (AAC) AG 125009-125547 AG AGA -recovered pasa_asmbl_22713.p1, internal, 120795, 120864 -recovered pasa_asmbl_22713.p1, internal, 122733, 123269 Valid prediction for CodingQuarry_transcript_25619-T1 Valid prediction for snap_scaffold_19-snap.660-T1 Valid prediction for snap_scaffold_19-snap.669-T1 Valid prediction for GlimmerHMM_glimmerT_43830-T1 Valid prediction for GlimmerHMM_glimmerT_43827-T1 Valid prediction for HiQ_model.g29085.t1 Valid prediction for snap_scaffold_19-snap.680-T1 Valid prediction for GlimmerHMM_glimmerT_43818-T1 Valid prediction for Augustus_model.g29081.t1 Valid prediction for snap_scaffold_19-snap.650-T1 Valid prediction for snap_scaffold_19-snap.643-T1 Valid prediction for GlimmerHMM_glimmerT_43817-T1 Valid prediction for snap_scaffold_19-snap.656-T1 Valid prediction for GlimmerHMM_glimmerT_43808-T1 Valid prediction for snap_scaffold_19-snap.686-T1 Valid prediction for snap_scaffold_19-snap.671-T1 Valid prediction for snap_scaffold_19-snap.676-T1 Couldn't classify 282838, 282929 Sorry, prediction pasa_asmbl_22081.p1 fails validation. (ATG) AA 275995-276142 GT AGG (TTG) AG 276346-276471 GT AGG (TGG) AG 276681-276818 GT AAG (ACC) AG 276897-277028 GT TGG (CTG) AG 277398-277535 GT AAG (ACC) AG 277668-277850 GT GGG (GAA) AG 278008-278199 GT GGG (AGG) AG 278437-278619 GT AGG (CCA) AG 278914-279090 GT TGG (CCC) AG 280017-280172 GT AGG (ACC) AG 280567-280695 GT TGG (ACC) AG 281003-281146 GT AGG (GAG) AG 282838-282929 AT ACA -recovered pasa_asmbl_22081.p1, initial, 275995, 276142 -recovered pasa_asmbl_22081.p1, internal, 276346, 276471 -recovered pasa_asmbl_22081.p1, internal, 276681, 276818 -recovered pasa_asmbl_22081.p1, internal, 276897, 277028 -recovered pasa_asmbl_22081.p1, internal, 277398, 277535 -recovered pasa_asmbl_22081.p1, internal, 277668, 277850 -recovered pasa_asmbl_22081.p1, internal, 278008, 278199 -recovered pasa_asmbl_22081.p1, internal, 278437, 278619 -recovered pasa_asmbl_22081.p1, internal, 278914, 279090 -recovered pasa_asmbl_22081.p1, internal, 280017, 280172 -recovered pasa_asmbl_22081.p1, internal, 280567, 280695 -recovered pasa_asmbl_22081.p1, internal, 281003, 281146 Valid prediction for snap_scaffold_19-snap.664-T1 Couldn't classify 295921, 295996 Couldn't classify 298445, 298545 Sorry, prediction pasa_asmbl_22079.p1 fails validation. (TAC) TG 295921-295996 GT TGG (GTC) AG 296183-296272 GT TCG (AAC) AG 296825-297246 GT AGG (ATG) AG 297412-297550 GT CCG (TGC) AG 297638-297799 GT TAG (AGT) AG 298061-298186 GT ACG (ATG) AG 298445-298545 CA GCC -recovered pasa_asmbl_22079.p1, initial, 297412, 297550 -recovered pasa_asmbl_22079.p1, internal, 296183, 296272 -recovered pasa_asmbl_22079.p1, internal, 296825, 297246 -recovered pasa_asmbl_22079.p1, internal, 297412, 297550 -recovered pasa_asmbl_22079.p1, internal, 297638, 297799 -recovered pasa_asmbl_22079.p1, internal, 298061, 298186 Couldn't classify 159942, 160108 Couldn't classify 160509, 160653 Sorry, prediction pasa_asmbl_22718.p1 fails validation. (GAG) AG 159942-160108 GT AGG (ACC) AG 160509-160653 GG CTG -recovered pasa_asmbl_22718.p1, internal, 159942, 160108 Couldn't classify 329955, 330074 Sorry, prediction pasa_asmbl_22075.p1 fails validation. (GAG) GA 329955-330074 GT GGG (GAG) AG 330146-330211 GT AGG (CAT) AG 330348-330407 GT AGG (CAA) AG 330993-331146 GT AGG (GCC) AG 331397-331581 AC AAA -recovered pasa_asmbl_22075.p1, terminal, 331397, 331581 -recovered pasa_asmbl_22075.p1, internal, 330146, 330211 -recovered pasa_asmbl_22075.p1, internal, 330348, 330407 -recovered pasa_asmbl_22075.p1, internal, 330993, 331146 Valid prediction for snap_scaffold_19-snap.646-T1 Valid prediction for Augustus_model.g29080.t1 Valid prediction for Augustus_model.g29082.t1 Valid prediction for GlimmerHMM_glimmerT_43811-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11792, rend_intergenic: 5978 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 54114, rend_intergenic: 44928 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 68266, rend_intergenic: 57552 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 78425, rend_intergenic: 70399 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103392, rend_intergenic: 99729 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114382, rend_intergenic: 107636 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 127439, rend_intergenic: 119683 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157276, rend_intergenic: 127837 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165075, rend_intergenic: 158629 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 173915, rend_intergenic: 165755 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 212374, rend_intergenic: 176392 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214130, rend_intergenic: 212994 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 216477, rend_intergenic: 215147 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 218298, rend_intergenic: 218193 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 223813, rend_intergenic: 220520 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 258146, rend_intergenic: 255609 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 260896, rend_intergenic: 258667 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 315934, rend_intergenic: 312490 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 338006, rend_intergenic: 335810 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 344260 -exon list size: 558 building trellis 0.2 0.4 0.5 0.7 0.9 1.1 1.2 1.4 1.6 1.8 2.0 2.1 2.3 2.5 2.7 2.9 3.0 3.2 3.4 3.6 3.8 3.9 4.1 4.3 4.5 4.6 4.8 5.0 5.2 5.4 5.5 5.7 5.9 6.1 6.2 6.4 6.6 6.8 7.0 7.1 7.3 7.5 7.7 7.9 8.0 8.2 8.4 8.6 8.8 8.9 9.1 9.3 9.5 9.6 9.8 10.0 10.2 10.4 10.5 10.7 10.9 11.1 11.2 11.4 11.6 11.8 12.0 12.1 12.3 12.5 12.7 12.9 13.0 13.2 13.4 13.6 13.8 13.9 14.1 14.3 14.5 14.6 14.8 15.0 15.2 15.4 15.5 15.7 15.9 16.1 16.2 16.4 16.6 16.8 17.0 17.1 17.3 17.5 17.7 17.9 18.0 18.2 18.4 18.6 18.8 18.9 19.1 19.3 19.5 19.6 19.8 20.0 20.2 20.4 20.5 20.7 20.9 21.1 21.2 21.4 21.6 21.8 22.0 22.1 22.3 22.5 22.7 22.9 23.0 23.2 23.4 23.6 23.8 23.9 24.1 24.3 24.5 24.6 24.8 25.0 25.2 25.4 25.5 25.7 25.9 26.1 26.2 26.4 26.6 26.8 27.0 27.1 27.3 27.5 27.7 27.9 28.0 28.2 28.4 28.6 28.7 28.9 29.1 29.3 29.5 29.6 29.8 30.0 30.2 30.4 30.5 30.7 30.9 31.1 31.2 31.4 31.6 31.8 32.0 32.1 32.3 32.5 32.7 32.9 33.0 33.2 33.4 33.6 33.8 33.9 34.1 34.3 34.5 34.6 34.8 35.0 35.2 35.4 35.5 35.7 35.9 36.1 36.2 36.4 36.6 36.8 37.0 37.1 37.3 37.5 37.7 37.9 38.0 38.2 38.4 38.6 38.8 38.9 39.1 39.3 39.5 39.6 39.8 40.0 40.2 40.4 40.5 40.7 40.9 41.1 41.2 41.4 41.6 41.8 42.0 42.1 42.3 42.5 42.7 42.9 43.0 43.2 43.4 43.6 43.8 43.9 44.1 44.3 44.5 44.6 44.8 45.0 45.2 45.4 45.5 45.7 45.9 46.1 46.2 46.4 46.6 46.8 47.0 47.1 47.3 47.5 47.7 47.9 48.0 48.2 48.4 48.6 48.8 48.9 49.1 49.3 49.5 49.6 49.8 50.0 50.2 50.4 50.5 50.7 50.9 51.1 51.2 51.4 51.6 51.8 52.0 52.1 52.3 52.5 52.7 52.9 53.0 53.2 53.4 53.6 53.8 53.9 54.1 54.3 54.5 54.6 54.8 55.0 55.2 55.4 55.5 55.7 55.9 56.1 56.2 56.4 56.6 56.8 57.0 57.1 57.3 57.5 57.7 57.9 58.0 58.2 58.4 58.6 58.8 58.9 59.1 59.3 59.5 59.6 59.8 60.0 60.2 60.4 60.5 60.7 60.9 61.1 61.3 61.4 61.6 61.8 62.0 62.1 62.3 62.5 62.7 62.9 63.0 63.2 63.4 63.6 63.7 63.9 64.1 64.3 64.5 64.6 64.8 65.0 65.2 65.4 65.5 65.7 65.9 66.1 66.2 66.4 66.6 66.8 67.0 67.1 67.3 67.5 67.7 67.9 68.0 68.2 68.4 68.6 68.8 68.9 69.1 69.3 69.5 69.6 69.8 70.0 70.2 70.4 70.5 70.7 70.9 71.1 71.2 71.4 71.6 71.8 72.0 72.1 72.3 72.5 72.7 72.9 73.0 73.2 73.4 73.6 73.8 73.9 74.1 74.3 74.5 74.6 74.8 75.0 75.2 75.4 75.5 75.7 75.9 76.1 76.2 76.4 76.6 76.8 77.0 77.1 77.3 77.5 77.7 77.9 78.0 78.2 78.4 78.6 78.8 78.9 79.1 79.3 79.5 79.6 79.8 80.0 80.2 80.4 80.5 80.7 80.9 81.1 81.2 81.4 81.6 81.8 82.0 82.1 82.3 82.5 82.7 82.9 83.0 83.2 83.4 83.6 83.8 83.9 84.1 84.3 84.5 84.6 84.8 85.0 85.2 85.4 85.5 85.7 85.9 86.1 86.2 86.4 86.6 86.8 87.0 87.1 87.3 87.5 87.7 87.9 88.0 88.2 88.4 88.6 88.8 88.9 89.1 89.3 89.5 89.6 89.8 90.0 90.2 90.4 90.5 90.7 90.9 91.1 91.2 91.4 91.6 91.8 92.0 92.1 92.3 92.5 92.7 92.9 93.0 93.2 93.4 93.6 93.8 93.9 94.1 94.3 94.5 94.6 94.8 95.0 95.2 95.4 95.5 95.7 95.9 96.1 96.2 96.4 96.6 96.8 97.0 97.1 97.3 97.5 97.7 97.9 98.0 98.2 98.4 98.6 98.8 98.9 99.1 99.3 99.5 99.6 99.8 -found 31 predictions from path traversal Error with prediction: snap lend_intergenic: 11792, rend_intergenic: 5978 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 54114, rend_intergenic: 44928 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 68266, rend_intergenic: 57552 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 78425, rend_intergenic: 70399 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103392, rend_intergenic: 99729 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114382, rend_intergenic: 107636 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 127439, rend_intergenic: 119683 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157276, rend_intergenic: 127837 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165075, rend_intergenic: 158629 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 173915, rend_intergenic: 165755 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 212374, rend_intergenic: 176392 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214130, rend_intergenic: 212994 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 216477, rend_intergenic: 215147 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 218298, rend_intergenic: 218193 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 223813, rend_intergenic: 220520 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 258146, rend_intergenic: 255609 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 260896, rend_intergenic: 258667 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 315934, rend_intergenic: 312490 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 338006, rend_intergenic: 335810 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 18 predictions persist after filtering for low support