-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_19/scaffold_19_1985015-2177672

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_43704-T1
Valid prediction for snap_scaffold_19-snap.429-T1
Valid prediction for snap_scaffold_19-snap.435-T1
Valid prediction for Augustus_model.g29010.t1
Valid prediction for GlimmerHMM_glimmerT_43692-T1
Valid prediction for snap_scaffold_19-snap.456-T1
Valid prediction for Augustus_model.g29008.t1
Valid prediction for snap_scaffold_19-snap.453-T1
Valid prediction for snap_scaffold_19-snap.444-T1
Valid prediction for snap_scaffold_19-snap.458-T1
Valid prediction for GlimmerHMM_glimmerT_43689-T1
Valid prediction for snap_scaffold_19-snap.431-T1
Valid prediction for Augustus_model.g29013.t1
Valid prediction for Augustus_model.g29004.t1
Valid prediction for GlimmerHMM_glimmerT_43701-T1
Valid prediction for snap_scaffold_19-snap.441-T1
Valid prediction for snap_scaffold_19-snap.446-T1
Valid prediction for Augustus_model.g29012.t1
Valid prediction for Augustus_model.g29000.t1
Valid prediction for snap_scaffold_19-snap.442-T1
Valid prediction for GlimmerHMM_glimmerT_43683-T1
Valid prediction for GlimmerHMM_glimmerT_43694-T1
Valid prediction for GlimmerHMM_glimmerT_43690-T1
Valid prediction for snap_scaffold_19-snap.432-T1
Valid prediction for snap_scaffold_19-snap.425-T1
Valid prediction for GlimmerHMM_glimmerT_43706-T1
Valid prediction for snap_scaffold_19-snap.438-T1
Valid prediction for GlimmerHMM_glimmerT_43708-T1
Valid prediction for snap_scaffold_19-snap.448-T1
Couldn't classify 94709, 95380
Sorry, prediction pasa_asmbl_21255.p1 fails validation.
(CTT)	 GG	94709-95380	AG	CCA
Valid prediction for snap_scaffold_19-snap.454-T1
Valid prediction for snap_scaffold_19-snap.427-T1
Valid prediction for GlimmerHMM_glimmerT_43705-T1
Valid prediction for Augustus_model.g29011.t1
Valid prediction for snap_scaffold_19-snap.449-T1
Valid prediction for snap_scaffold_19-snap.455-T1
Valid prediction for snap_scaffold_19-snap.428-T1
Valid prediction for GlimmerHMM_glimmerT_43703-T1
Valid prediction for Augustus_model.g29002.t1
Valid prediction for snap_scaffold_19-snap.460-T1
Valid prediction for GlimmerHMM_glimmerT_43699-T1
Valid prediction for snap_scaffold_19-snap.457-T1
Valid prediction for GlimmerHMM_glimmerT_43686-T1
Valid prediction for snap_scaffold_19-snap.436-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_43707-T1
Valid prediction for GlimmerHMM_glimmerT_43697-T1
Valid prediction for GlimmerHMM_glimmerT_43702-T1
Valid prediction for GlimmerHMM_glimmerT_43687-T1
Valid prediction for Augustus_model.g29001.t1
Valid prediction for snap_scaffold_19-snap.426-T1
Valid prediction for GlimmerHMM_glimmerT_43696-T1
Valid prediction for snap_scaffold_19-snap.433-T1
Valid prediction for snap_scaffold_19-snap.451-T1
Valid prediction for GlimmerHMM_glimmerT_43691-T1
Valid prediction for snap_scaffold_19-snap.430-T1
Valid prediction for GlimmerHMM_glimmerT_43698-T1
Valid prediction for snap_scaffold_19-snap.459-T1
Valid prediction for snap_scaffold_19-snap.443-T1
Valid prediction for GlimmerHMM_glimmerT_43693-T1
Valid prediction for Augustus_model.g29005.t1
Valid prediction for snap_scaffold_19-snap.445-T1
Valid prediction for Augustus_model.g29007.t1
Valid prediction for snap_scaffold_19-snap.434-T1
Valid prediction for GlimmerHMM_glimmerT_43700-T1
Valid prediction for GlimmerHMM_glimmerT_43684-T1
Valid prediction for snap_scaffold_19-snap.452-T1
Valid prediction for Augustus_model.g29009.t1
Valid prediction for snap_scaffold_19-snap.450-T1
Valid prediction for Augustus_model.g29006.t1
Valid prediction for GlimmerHMM_glimmerT_43688-T1
Valid prediction for GlimmerHMM_glimmerT_43685-T1
Valid prediction for snap_scaffold_19-snap.437-T1
Valid prediction for Augustus_model.g29003.t1
Valid prediction for GlimmerHMM_glimmerT_43695-T1
Valid prediction for snap_scaffold_19-snap.447-T1
Valid prediction for snap_scaffold_19-snap.440-T1
Valid prediction for GlimmerHMM_glimmerT_43682-T1
Valid prediction for snap_scaffold_19-snap.439-T1
Valid prediction for snap_scaffold_19-snap.424-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12874, rend_intergenic: 11647  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17429, rend_intergenic: 13032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35502, rend_intergenic: 30409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37703, rend_intergenic: 36233  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79507, rend_intergenic: 72012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95068, rend_intergenic: 85635  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111433, rend_intergenic: 95122  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122488, rend_intergenic: 114755  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124338, rend_intergenic: 122988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137970, rend_intergenic: 134967  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161957, rend_intergenic: 149406  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165507, rend_intergenic: 162244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185720, rend_intergenic: 180391  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 192658
-exon list size: 243


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.4    
2.9    
3.3    
3.7    
4.1    
4.5    
4.9    
5.3    
5.7    
6.1    
6.5    
6.9    
7.3    
7.8    
8.2    
8.6    
9.0    
9.4    
9.8    
10.2    
10.6    
11.0    
11.4    
11.8    
12.2    
12.7    
13.1    
13.5    
13.9    
14.3    
14.7    
15.1    
15.5    
15.9    
16.3    
16.7    
17.1    
17.6    
18.0    
18.4    
18.8    
19.2    
19.6    
20.0    
20.4    
20.8    
21.2    
21.6    
22.0    
22.4    
22.9    
23.3    
23.7    
24.1    
24.5    
24.9    
25.3    
25.7    
26.1    
26.5    
26.9    
27.3    
27.8    
28.2    
28.6    
29.0    
29.4    
29.8    
30.2    
30.6    
31.0    
31.4    
31.8    
32.2    
32.7    
33.1    
33.5    
33.9    
34.3    
34.7    
35.1    
35.5    
35.9    
36.3    
36.7    
37.1    
37.6    
38.0    
38.4    
38.8    
39.2    
39.6    
40.0    
40.4    
40.8    
41.2    
41.6    
42.0    
42.4    
42.9    
43.3    
43.7    
44.1    
44.5    
44.9    
45.3    
45.7    
46.1    
46.5    
46.9    
47.3    
47.8    
48.2    
48.6    
49.0    
49.4    
49.8    
50.2    
50.6    
51.0    
51.4    
51.8    
52.2    
52.7    
53.1    
53.5    
53.9    
54.3    
54.7    
55.1    
55.5    
55.9    
56.3    
56.7    
57.1    
57.6    
58.0    
58.4    
58.8    
59.2    
59.6    
60.0    
60.4    
60.8    
61.2    
61.6    
62.0    
62.4    
62.9    
63.3    
63.7    
64.1    
64.5    
64.9    
65.3    
65.7    
66.1    
66.5    
66.9    
67.3    
67.8    
68.2    
68.6    
69.0    
69.4    
69.8    
70.2    
70.6    
71.0    
71.4    
71.8    
72.2    
72.7    
73.1    
73.5    
73.9    
74.3    
74.7    
75.1    
75.5    
75.9    
76.3    
76.7    
77.1    
77.6    
78.0    
78.4    
78.8    
79.2    
79.6    
80.0    
80.4    
80.8    
81.2    
81.6    
82.0    
82.4    
82.9    
83.3    
83.7    
84.1    
84.5    
84.9    
85.3    
85.7    
86.1    
86.5    
86.9    
87.3    
87.8    
88.2    
88.6    
89.0    
89.4    
89.8    
90.2    
90.6    
91.0    
91.4    
91.8    
92.2    
92.7    
93.1    
93.5    
93.9    
94.3    
94.7    
95.1    
95.5    
95.9    
96.3    
96.7    
97.1    
97.6    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 12874, rend_intergenic: 11647  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17429, rend_intergenic: 13032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35502, rend_intergenic: 30409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37703, rend_intergenic: 36233  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79507, rend_intergenic: 72012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95068, rend_intergenic: 85635  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111433, rend_intergenic: 95122  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122488, rend_intergenic: 114755  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124338, rend_intergenic: 122988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137970, rend_intergenic: 134967  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161957, rend_intergenic: 149406  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165507, rend_intergenic: 162244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185720, rend_intergenic: 180391  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 16096
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support