-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_19/scaffold_19_13455676-13612450

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 51368, 51408
Sorry, prediction pasa_asmbl_21880.p1 fails validation.
(TGT)	 TG	51368-51408	GT	ACG
(GAA)	 AG	51655-51727	GT	AGG
(GGT)	 AG	52345-52491	GT	TAG
(GTG)	 AG	52576-52664	GT	GGG
(TGC)	 AG	52780-52937	GT	CGG
(GAG)	 AG	53156-53253	TA	GAT
-recovered pasa_asmbl_21880.p1, terminal, 53156, 53253
-recovered pasa_asmbl_21880.p1, internal, 51655, 51727
-recovered pasa_asmbl_21880.p1, internal, 52345, 52491
-recovered pasa_asmbl_21880.p1, internal, 52576, 52664
-recovered pasa_asmbl_21880.p1, internal, 52780, 52937
Valid prediction for GlimmerHMM_glimmerT_45252-T1
Valid prediction for Augustus_model.g30035.t1
Valid prediction for snap_scaffold_19-snap.2654-T1
Valid prediction for GlimmerHMM_glimmerT_45243-T1
Valid prediction for GlimmerHMM_glimmerT_45241-T1
Valid prediction for Augustus_model.g30031.t1
Valid prediction for GlimmerHMM_glimmerT_45240-T1
Valid prediction for Augustus_model.g30030.t1
Valid prediction for Augustus_model.g30026.t1
Valid prediction for GlimmerHMM_glimmerT_45244-T1
Valid prediction for GlimmerHMM_glimmerT_45223-T1
Valid prediction for GlimmerHMM_glimmerT_45246-T1
Valid prediction for GlimmerHMM_glimmerT_45227-T1
Valid prediction for snap_scaffold_19-snap.2676-T1
Valid prediction for snap_scaffold_19-snap.2661-T1
Valid prediction for Augustus_model.g30025.t1
Valid prediction for GlimmerHMM_glimmerT_45230-T1
Valid prediction for snap_scaffold_19-snap.2669-T1
Valid prediction for GlimmerHMM_glimmerT_45234-T1
Valid prediction for GlimmerHMM_glimmerT_45232-T1
Valid prediction for Augustus_model.g30033.t1
Valid prediction for GlimmerHMM_glimmerT_45235-T1
Valid prediction for CodingQuarry_transcript_25894-T1
Valid prediction for GlimmerHMM_glimmerT_45250-T1
Valid prediction for snap_scaffold_19-snap.2664-T1
Valid prediction for snap_scaffold_19-snap.2674-T1
Valid prediction for GlimmerHMM_glimmerT_45239-T1
Valid prediction for Augustus_model.g30028.t1
Valid prediction for snap_scaffold_19-snap.2663-T1
Valid prediction for GlimmerHMM_glimmerT_45236-T1
Valid prediction for Augustus_model.g30029.t1
Valid prediction for snap_scaffold_19-snap.2668-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_19-snap.2671-T1
Valid prediction for GlimmerHMM_glimmerT_45224-T1
Valid prediction for snap_scaffold_19-snap.2670-T1
Valid prediction for GlimmerHMM_glimmerT_45249-T1
Valid prediction for GlimmerHMM_glimmerT_45245-T1
Couldn't classify 84893, 85585
Sorry, prediction pasa_asmbl_22656.p1 fails validation.
(CCC)	 GC	84893-85585	CT	ACC
Valid prediction for GlimmerHMM_glimmerT_45242-T1
Valid prediction for Augustus_model.g30034.t1
Valid prediction for Augustus_model.g30036.t1
Valid prediction for GlimmerHMM_glimmerT_45238-T1
Valid prediction for snap_scaffold_19-snap.2660-T1
Valid prediction for snap_scaffold_19-snap.2656-T1
Valid prediction for snap_scaffold_19-snap.2667-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_19-snap.2648-T1
Valid prediction for snap_scaffold_19-snap.2678-T1
Valid prediction for GlimmerHMM_glimmerT_45248-T1
Valid prediction for GlimmerHMM_glimmerT_45233-T1
Valid prediction for GlimmerHMM_glimmerT_45231-T1
Valid prediction for Augustus_model.g30024.t1
Valid prediction for GlimmerHMM_glimmerT_45225-T1
Valid prediction for Augustus_model.g30032.t1
Valid prediction for GlimmerHMM_glimmerT_45251-T1
Valid prediction for snap_scaffold_19-snap.2675-T1
Valid prediction for GlimmerHMM_glimmerT_45228-T1
Valid prediction for HiQ_model.g30037.t1
Valid prediction for snap_scaffold_19-snap.2665-T1
Valid prediction for GlimmerHMM_glimmerT_45237-T1
Valid prediction for snap_scaffold_19-snap.2649-T1
Valid prediction for snap_scaffold_19-snap.2652-T1
Valid prediction for GlimmerHMM_glimmerT_45222-T1
Valid prediction for snap_scaffold_19-snap.2650-T1
Valid prediction for snap_scaffold_19-snap.2662-T1
Valid prediction for GlimmerHMM_glimmerT_45226-T1
Valid prediction for snap_scaffold_19-snap.2657-T1
Valid prediction for GlimmerHMM_glimmerT_45247-T1
Valid prediction for snap_scaffold_19-snap.2651-T1
Valid prediction for Augustus_model.g30027.t1
Valid prediction for GlimmerHMM_glimmerT_45253-T1
Valid prediction for pasa_asmbl_22655.p1
Valid prediction for snap_scaffold_19-snap.2659-T1
Valid prediction for snap_scaffold_19-snap.2677-T1
Valid prediction for GlimmerHMM_glimmerT_45229-T1
Valid prediction for snap_scaffold_19-snap.2672-T1
Valid prediction for snap_scaffold_19-snap.2666-T1
Valid prediction for snap_scaffold_19-snap.2658-T1
Valid prediction for snap_scaffold_19-snap.2673-T1
Valid prediction for snap_scaffold_19-snap.2653-T1
Valid prediction for snap_scaffold_19-snap.2655-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 156775
-exon list size: 194


building trellis

0.5    
1.0    
1.5    
2.0    
2.6    
3.1    
3.6    
4.1    
4.6    
5.1    
5.6    
6.1    
6.6    
7.1    
7.7    
8.2    
8.7    
9.2    
9.7    
10.2    
10.7    
11.2    
11.7    
12.2    
12.8    
13.3    
13.8    
14.3    
14.8    
15.3    
15.8    
16.3    
16.8    
17.3    
17.9    
18.4    
18.9    
19.4    
19.9    
20.4    
20.9    
21.4    
21.9    
22.4    
23.0    
23.5    
24.0    
24.5    
25.0    
25.5    
26.0    
26.5    
27.0    
27.6    
28.1    
28.6    
29.1    
29.6    
30.1    
30.6    
31.1    
31.6    
32.1    
32.7    
33.2    
33.7    
34.2    
34.7    
35.2    
35.7    
36.2    
36.7    
37.2    
37.8    
38.3    
38.8    
39.3    
39.8    
40.3    
40.8    
41.3    
41.8    
42.3    
42.9    
43.4    
43.9    
44.4    
44.9    
45.4    
45.9    
46.4    
46.9    
47.4    
48.0    
48.5    
49.0    
49.5    
50.0    
50.5    
51.0    
51.5    
52.0    
52.6    
53.1    
53.6    
54.1    
54.6    
55.1    
55.6    
56.1    
56.6    
57.1    
57.7    
58.2    
58.7    
59.2    
59.7    
60.2    
60.7    
61.2    
61.7    
62.2    
62.8    
63.3    
63.8    
64.3    
64.8    
65.3    
65.8    
66.3    
66.8    
67.3    
67.9    
68.4    
68.9    
69.4    
69.9    
70.4    
70.9    
71.4    
71.9    
72.4    
73.0    
73.5    
74.0    
74.5    
75.0    
75.5    
76.0    
76.5    
77.0    
77.6    
78.1    
78.6    
79.1    
79.6    
80.1    
80.6    
81.1    
81.6    
82.1    
82.7    
83.2    
83.7    
84.2    
84.7    
85.2    
85.7    
86.2    
86.7    
87.2    
87.8    
88.3    
88.8    
89.3    
89.8    
90.3    
90.8    
91.3    
91.8    
92.3    
92.9    
93.4    
93.9    
94.4    
94.9    
95.4    
95.9    
96.4    
96.9    
97.4    
98.0    
98.5    
99.0    
99.5    
-found 33 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 32 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 141114 - 156775
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 141114 - 152462
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support