-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_19/scaffold_19_12902430-13098511

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g29970.t1
Valid prediction for snap_scaffold_19-snap.2562-T1
Valid prediction for Augustus_model.g29965.t1
Valid prediction for Augustus_model.g29958.t1
Valid prediction for snap_scaffold_19-snap.2553-T1
Valid prediction for GlimmerHMM_glimmerT_45147-T1
Valid prediction for HiQ_model.g29968.t1
Valid prediction for snap_scaffold_19-snap.2540-T1
Valid prediction for Augustus_model.g29960.t1
Valid prediction for Augustus_model.g29979.t1
Couldn't classify 58920, 59096
Couldn't classify 60307, 60383
Couldn't classify 60501, 60581
Sorry, prediction CodingQuarry_transcript_25868-T1 fails validation.
(ATG)	 AC	57319-57334	GT	AGG
(TGT)	 AG	57681-57825	GT	CGG
(GCC)	 AG	58099-58244	GT	AGG
(CAG)	 CC	58920-59096	GT	TGG
(ACC)	 AG	59213-59328	GT	ATG
(ACC)	 AG	59620-59780	GT	ATG
(TTG)	 AG	59997-60123	GT	AGG
(ACT)	 AG	60307-60383	GG	CAG
(GCA)	 AT	60501-60581	GT	AGG
(TAA)	 AG	60680-60737	GT	TGG
(TTC)	 AG	61031-61141	GT	TGG
(GCT)	 AG	61337-61405	CC	AAC
-recovered CodingQuarry_transcript_25868-T1, initial, 57319, 57334
-recovered CodingQuarry_transcript_25868-T1, terminal, 61337, 61405
-recovered CodingQuarry_transcript_25868-T1, internal, 57681, 57825
-recovered CodingQuarry_transcript_25868-T1, internal, 58099, 58244
-recovered CodingQuarry_transcript_25868-T1, internal, 59213, 59328
-recovered CodingQuarry_transcript_25868-T1, internal, 59620, 59780
-recovered CodingQuarry_transcript_25868-T1, internal, 59997, 60123
-recovered CodingQuarry_transcript_25868-T1, internal, 60680, 60737
-recovered CodingQuarry_transcript_25868-T1, internal, 61031, 61141
Valid prediction for GlimmerHMM_glimmerT_45159-T1
Valid prediction for snap_scaffold_19-snap.2532-T1
Valid prediction for pasa_asmbl_21824.p1
Valid prediction for GlimmerHMM_glimmerT_45154-T1
Valid prediction for HiQ_model.g29962.t1
Valid prediction for GlimmerHMM_glimmerT_45164-T1
Valid prediction for CodingQuarry_transcript_25873-T1
Valid prediction for pasa_asmbl_21843.p1
Valid prediction for snap_scaffold_19-snap.2546-T1
Valid prediction for snap_scaffold_19-snap.2557-T1
Valid prediction for GlimmerHMM_glimmerT_45146-T1
Valid prediction for HiQ_model.g29966.t1
Valid prediction for Augustus_model.g29972.t1
Valid prediction for CodingQuarry_transcript_25865-T1
Valid prediction for snap_scaffold_19-snap.2554-T1
Valid prediction for GlimmerHMM_glimmerT_45141-T1
Valid prediction for snap_scaffold_19-snap.2524-T1
Valid prediction for Augustus_model.g29967.t1
Valid prediction for Augustus_model.g29975.t1
Valid prediction for GlimmerHMM_glimmerT_45153-T1
Valid prediction for snap_scaffold_19-snap.2537-T1
Valid prediction for snap_scaffold_19-snap.2535-T1
Valid prediction for HiQ_model.g29956.t1
Valid prediction for GlimmerHMM_glimmerT_45135-T1
Valid prediction for snap_scaffold_19-snap.2542-T1
Valid prediction for GlimmerHMM_glimmerT_45133-T1
Valid prediction for pasa_asmbl_21825.p1
Valid prediction for snap_scaffold_19-snap.2559-T1
Valid prediction for Augustus_model.g29974.t1
Valid prediction for CodingQuarry_transcript_25864-T1
Valid prediction for snap_scaffold_19-snap.2548-T1
Valid prediction for snap_scaffold_19-snap.2529-T1
Valid prediction for snap_scaffold_19-snap.2536-T1
Couldn't classify 193458, 193835
Sorry, prediction pasa_asmbl_21849.p1 fails validation.
(CTG)	 CC	193458-193835	CA	AAC
Valid prediction for GlimmerHMM_glimmerT_45145-T1
Valid prediction for GlimmerHMM_glimmerT_45137-T1
Couldn't classify 99804, 100092
Sorry, prediction pasa_asmbl_21835.p1 fails validation.
(GTG)	 AT	99804-100092	GT	AGG
(TGG)	 AG	100340-100518	GT	AGG
(GTG)	 AG	100657-100877	GT	CTG
(GTT)	 AG	100980-101151	GT	TGG
(GTG)	 AG	101331-101486	GT	TGG
(GTG)	 AG	101842-101925	GT	AGG
(TTC)	 AG	102130-102250	GT	AGG
(GCC)	 AG	102366-102450	GT	GGG
(GGT)	 AG	102966-103056	GT	AGG
(ATC)	 AG	103291-103501	GT	AGG
(AGT)	 AG	103615-103698	GT	AGG
(ATC)	 AG	103841-103962	GT	CGG
(AAC)	 AG	104304-104399	GT	AGG
(GGG)	 AG	104598-104662	GT	AGG
(GCT)	 AG	104943-105080	GT	AGG
(TGG)	 AG	105414-105462	TA	GAT
-recovered pasa_asmbl_21835.p1, terminal, 105414, 105462
-recovered pasa_asmbl_21835.p1, internal, 100340, 100518
-recovered pasa_asmbl_21835.p1, internal, 100657, 100877
-recovered pasa_asmbl_21835.p1, internal, 100980, 101151
-recovered pasa_asmbl_21835.p1, internal, 101331, 101486
-recovered pasa_asmbl_21835.p1, internal, 101842, 101925
-recovered pasa_asmbl_21835.p1, internal, 102130, 102250
-recovered pasa_asmbl_21835.p1, internal, 102366, 102450
-recovered pasa_asmbl_21835.p1, internal, 102966, 103056
-recovered pasa_asmbl_21835.p1, internal, 103291, 103501
-recovered pasa_asmbl_21835.p1, internal, 103615, 103698
-recovered pasa_asmbl_21835.p1, internal, 103841, 103962
-recovered pasa_asmbl_21835.p1, internal, 104304, 104399
-recovered pasa_asmbl_21835.p1, internal, 104598, 104662
-recovered pasa_asmbl_21835.p1, internal, 104943, 105080
Valid prediction for snap_scaffold_19-snap.2550-T1
Valid prediction for GlimmerHMM_glimmerT_45149-T1
Valid prediction for snap_scaffold_19-snap.2544-T1
Couldn't classify 58920, 59096
Sorry, prediction CodingQuarry_transcript_25867-T1 fails validation.
(ATG)	 AC	57319-57334	GT	AGG
(TGT)	 AG	57681-57825	GT	CGG
(GCC)	 AG	58099-58244	GT	AGG
(CAG)	 CC	58920-59096	GT	TGG
(ACC)	 AG	59213-59328	GT	ATG
(ACC)	 AG	59620-59780	GT	ATG
(TTG)	 AG	59997-60123	GT	AGG
(ACT)	 AG	60307-60384	GT	AGG
(GTG)	 AG	60505-60581	GT	AGG
(TAA)	 AG	60680-60737	GT	TGG
(TTC)	 AG	61031-61141	GT	TGG
(GCT)	 AG	61337-61405	CC	AAC
-recovered CodingQuarry_transcript_25867-T1, initial, 57319, 57334
-recovered CodingQuarry_transcript_25867-T1, terminal, 61337, 61405
-recovered CodingQuarry_transcript_25867-T1, internal, 57681, 57825
-recovered CodingQuarry_transcript_25867-T1, internal, 58099, 58244
-recovered CodingQuarry_transcript_25867-T1, internal, 59213, 59328
-recovered CodingQuarry_transcript_25867-T1, internal, 59620, 59780
-recovered CodingQuarry_transcript_25867-T1, internal, 59997, 60123
-recovered CodingQuarry_transcript_25867-T1, internal, 60307, 60384
-recovered CodingQuarry_transcript_25867-T1, internal, 60505, 60581
-recovered CodingQuarry_transcript_25867-T1, internal, 60680, 60737
-recovered CodingQuarry_transcript_25867-T1, internal, 61031, 61141
Valid prediction for snap_scaffold_19-snap.2555-T1
Valid prediction for GlimmerHMM_glimmerT_45156-T1
Valid prediction for GlimmerHMM_glimmerT_45139-T1
Valid prediction for snap_scaffold_19-snap.2539-T1
Valid prediction for snap_scaffold_19-snap.2530-T1
Valid prediction for snap_scaffold_19-snap.2525-T1
Valid prediction for pasa_asmbl_21830.p1
Valid prediction for snap_scaffold_19-snap.2551-T1
Valid prediction for GlimmerHMM_glimmerT_45134-T1
Valid prediction for Augustus_model.g29976.t1
Valid prediction for GlimmerHMM_glimmerT_45151-T1
Valid prediction for Augustus_model.g29957.t1
Valid prediction for snap_scaffold_19-snap.2528-T1
Sorry, intron length (6) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_19-snap.2538-T1
Valid prediction for CodingQuarry_transcript_25870-T1
Valid prediction for snap_scaffold_19-snap.2534-T1
Valid prediction for snap_scaffold_19-snap.2560-T1
Couldn't classify 142578, 142819
Sorry, prediction pasa_asmbl_22565.p1 fails validation.
(ATG)	 AG	140805-140828	GT	AGG
(TTG)	 AG	141205-141323	GT	AGG
(ATG)	 AG	141559-141772	GT	AGG
(GTG)	 AG	142245-142300	GT	ACG
(TGA)	 AG	142370-142479	GT	TGG
(GCC)	 AG	142578-142819	GA	GAG
-recovered pasa_asmbl_22565.p1, initial, 140805, 140828
add_exon() Sorry, pasa_asmbl_22565.p1 141559-141772-initial-1 is invalid.
-recovered pasa_asmbl_22565.p1, initial, 141559, 141772
-recovered pasa_asmbl_22565.p1, internal, 140805, 140828
-recovered pasa_asmbl_22565.p1, internal, 141205, 141323
-recovered pasa_asmbl_22565.p1, internal, 141559, 141772
-recovered pasa_asmbl_22565.p1, internal, 142245, 142300
-recovered pasa_asmbl_22565.p1, internal, 142370, 142479
Valid prediction for snap_scaffold_19-snap.2543-T1
Valid prediction for GlimmerHMM_glimmerT_45143-T1
Valid prediction for GlimmerHMM_glimmerT_45144-T1
Valid prediction for Augustus_model.g29959.t1
Valid prediction for GlimmerHMM_glimmerT_45160-T1
Valid prediction for GlimmerHMM_glimmerT_45138-T1
Valid prediction for Augustus_model.g29955.t1
Valid prediction for snap_scaffold_19-snap.2545-T1
Valid prediction for CodingQuarry_transcript_25878-T1
Valid prediction for GlimmerHMM_glimmerT_45161-T1
Valid prediction for CodingQuarry_transcript_25877-T1
Valid prediction for GlimmerHMM_glimmerT_45162-T1
Couldn't classify 70942, 71110
Sorry, prediction HiQ_model.g29971.t1 fails validation.
(ATG)	 AA	52334-52414	GT	CGG
(ATC)	 AG	52734-52802	GT	AGG
(CCG)	 AG	52907-53037	GT	AGG
(GGA)	 AG	53138-53240	GT	CCG
(GAC)	 AG	53343-53375	GT	TCG
(GCG)	 AG	53495-53549	GT	TGG
(ATT)	 AG	54153-54277	GT	AGG
(ATC)	 AG	54435-54521	GT	AGG
(TTC)	 AG	54702-54769	GT	AGG
(GAG)	 AG	55407-55560	GT	AGG
(ATC)	 AG	55774-55833	GT	AGG
(ACG)	 AG	56057-56164	GT	TGG
(GTA)	 AG	56279-56359	GT	GCG
(TGG)	 AG	56521-56691	GT	TGG
(GCC)	 AG	57434-57508	GT	AGG
(TCG)	 AG	57734-57769	GT	AGG
(CGG)	 AG	57961-58051	GT	GGG
(GGC)	 AG	58201-58247	GT	AGG
(ATG)	 AG	58344-58433	GT	TGG
(GAC)	 AG	58883-58929	GT	ACG
(AGA)	 AG	59658-59880	GT	AGG
(GTG)	 AG	59970-60059	GT	AGG
(AAA)	 AG	60591-60642	GT	GGG
(ATG)	 AG	60740-60782	GT	AGG
(CTG)	 AG	60907-60979	GT	AGG
(GTG)	 AG	62139-62258	GT	TGG
(ACA)	 AG	62611-62682	GT	AGG
(GTG)	 AG	62797-62916	GT	AGG
(GTT)	 AG	63214-63270	GT	AGG
(GTG)	 AG	65457-65539	GT	TTG
(CTA)	 AG	66284-66368	GT	AGG
(GAG)	 AG	66550-66648	GT	ATG
(GAG)	 AG	66722-66811	GT	AGG
(GAG)	 AG	66915-66961	GT	AGG
(AGA)	 AG	67980-68124	GT	AGG
(GTA)	 AG	68275-68364	GT	AGG
(ACC)	 AG	68524-68697	GT	AGG
(GTG)	 AG	68804-68885	GT	AGG
(CGT)	 AG	69084-69166	GT	AGG
(GAT)	 AG	69464-69544	GT	AGG
(ACT)	 AG	70660-70829	GT	AGG
(CTG)	 AG	70942-71110	GT	AGG
-recovered HiQ_model.g29971.t1, initial, 52334, 52414
-recovered HiQ_model.g29971.t1, initial, 58344, 58433
add_exon() Sorry, HiQ_model.g29971.t1 60740-60782-initial-1 is invalid.
-recovered HiQ_model.g29971.t1, initial, 60740, 60782
-recovered HiQ_model.g29971.t1, internal, 52734, 52802
-recovered HiQ_model.g29971.t1, internal, 52907, 53037
-recovered HiQ_model.g29971.t1, internal, 53138, 53240
-recovered HiQ_model.g29971.t1, internal, 53343, 53375
-recovered HiQ_model.g29971.t1, internal, 53495, 53549
-recovered HiQ_model.g29971.t1, internal, 54153, 54277
-recovered HiQ_model.g29971.t1, internal, 54435, 54521
-recovered HiQ_model.g29971.t1, internal, 54702, 54769
-recovered HiQ_model.g29971.t1, internal, 55407, 55560
-recovered HiQ_model.g29971.t1, internal, 55774, 55833
-recovered HiQ_model.g29971.t1, internal, 56057, 56164
-recovered HiQ_model.g29971.t1, internal, 56279, 56359
-recovered HiQ_model.g29971.t1, internal, 56521, 56691
-recovered HiQ_model.g29971.t1, internal, 57434, 57508
-recovered HiQ_model.g29971.t1, internal, 57734, 57769
-recovered HiQ_model.g29971.t1, internal, 57961, 58051
-recovered HiQ_model.g29971.t1, internal, 58201, 58247
-recovered HiQ_model.g29971.t1, internal, 58344, 58433
-recovered HiQ_model.g29971.t1, internal, 58883, 58929
-recovered HiQ_model.g29971.t1, internal, 59658, 59880
-recovered HiQ_model.g29971.t1, internal, 59970, 60059
-recovered HiQ_model.g29971.t1, internal, 60591, 60642
-recovered HiQ_model.g29971.t1, internal, 60740, 60782
-recovered HiQ_model.g29971.t1, internal, 60907, 60979
-recovered HiQ_model.g29971.t1, internal, 62139, 62258
-recovered HiQ_model.g29971.t1, internal, 62611, 62682
-recovered HiQ_model.g29971.t1, internal, 62797, 62916
-recovered HiQ_model.g29971.t1, internal, 63214, 63270
-recovered HiQ_model.g29971.t1, internal, 65457, 65539
-recovered HiQ_model.g29971.t1, internal, 66284, 66368
-recovered HiQ_model.g29971.t1, internal, 66550, 66648
-recovered HiQ_model.g29971.t1, internal, 66722, 66811
-recovered HiQ_model.g29971.t1, internal, 66915, 66961
-recovered HiQ_model.g29971.t1, internal, 67980, 68124
-recovered HiQ_model.g29971.t1, internal, 68275, 68364
-recovered HiQ_model.g29971.t1, internal, 68524, 68697
-recovered HiQ_model.g29971.t1, internal, 68804, 68885
-recovered HiQ_model.g29971.t1, internal, 69084, 69166
-recovered HiQ_model.g29971.t1, internal, 69464, 69544
-recovered HiQ_model.g29971.t1, internal, 70660, 70829
-recovered HiQ_model.g29971.t1, internal, 70942, 71110
Valid prediction for pasa_asmbl_22590.p1
Valid prediction for snap_scaffold_19-snap.2558-T1
Valid prediction for GlimmerHMM_glimmerT_45132-T1
Valid prediction for snap_scaffold_19-snap.2552-T1
Valid prediction for GlimmerHMM_glimmerT_45136-T1
Valid prediction for snap_scaffold_19-snap.2522-T1
Valid prediction for snap_scaffold_19-snap.2521-T1
Valid prediction for GlimmerHMM_glimmerT_45150-T1
Couldn't classify 157365, 157460
Couldn't classify 159781, 159900
Sorry, prediction pasa_asmbl_22560.p1 fails validation.
(ACA)	 CC	157365-157460	GT	AGG
(ATA)	 AG	158220-158273	GT	CGG
(CGG)	 AG	158640-158873	GT	AGG
(ATG)	 AG	159384-159584	GT	AGG
(AGG)	 AG	159781-159900	GT	CAG
-recovered pasa_asmbl_22560.p1, initial, 159384, 159584
-recovered pasa_asmbl_22560.p1, internal, 158220, 158273
-recovered pasa_asmbl_22560.p1, internal, 158640, 158873
-recovered pasa_asmbl_22560.p1, internal, 159384, 159584
-recovered pasa_asmbl_22560.p1, internal, 159781, 159900
Valid prediction for GlimmerHMM_glimmerT_45140-T1
Valid prediction for pasa_asmbl_22586.p1
Valid prediction for HiQ_model.g29977.t1
Valid prediction for Augustus_model.g29961.t1
Valid prediction for snap_scaffold_19-snap.2526-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_45142-T1
Valid prediction for snap_scaffold_19-snap.2531-T1
Valid prediction for snap_scaffold_19-snap.2523-T1
Valid prediction for GlimmerHMM_glimmerT_45157-T1
Couldn't classify 131069, 131167
Sorry, prediction pasa_asmbl_22572.p1 fails validation.
(ATG)	 TC	127033-127080	GT	AGG
(TCT)	 AG	128037-128147	GT	AGG
(GAG)	 AG	128269-128416	GT	CGG
(GTA)	 AG	128579-128670	GT	TGG
(CTG)	 AG	128933-129103	GT	AGG
(GAG)	 AG	129426-129620	GT	AGG
(CAC)	 AG	129822-129941	GT	TTG
(CTT)	 AG	130222-130296	GT	AGG
(TTG)	 AG	130652-130744	GT	AGG
(ATG)	 AG	130865-130960	GT	AGG
(AGG)	 AG	131069-131167	AA	ACA
-recovered pasa_asmbl_22572.p1, initial, 127033, 127080
-recovered pasa_asmbl_22572.p1, initial, 130865, 130960
-recovered pasa_asmbl_22572.p1, internal, 128037, 128147
-recovered pasa_asmbl_22572.p1, internal, 128269, 128416
-recovered pasa_asmbl_22572.p1, internal, 128579, 128670
-recovered pasa_asmbl_22572.p1, internal, 128933, 129103
-recovered pasa_asmbl_22572.p1, internal, 129426, 129620
-recovered pasa_asmbl_22572.p1, internal, 129822, 129941
-recovered pasa_asmbl_22572.p1, internal, 130222, 130296
-recovered pasa_asmbl_22572.p1, internal, 130652, 130744
-recovered pasa_asmbl_22572.p1, internal, 130865, 130960
Valid prediction for Augustus_model.g29978.t1
Valid prediction for Augustus_model.g29973.t1
Valid prediction for pasa_asmbl_22581.p1
Couldn't classify 154062, 154149
Couldn't classify 155321, 155407
Sorry, prediction pasa_asmbl_22562.p1 fails validation.
(CTG)	 TG	154062-154149	GT	GGG
(TCG)	 AG	154260-154338	GT	AGG
(GGT)	 AG	154464-154603	GT	AGG
(ACG)	 AG	154815-154985	GT	CAG
(AGT)	 AG	155074-155174	GT	AGG
(CCC)	 AG	155321-155407	CC	GCC
-recovered pasa_asmbl_22562.p1, internal, 154260, 154338
-recovered pasa_asmbl_22562.p1, internal, 154464, 154603
-recovered pasa_asmbl_22562.p1, internal, 154815, 154985
-recovered pasa_asmbl_22562.p1, internal, 155074, 155174
Valid prediction for snap_scaffold_19-snap.2549-T1
Valid prediction for HiQ_model.g29969.t1
Valid prediction for HiQ_model.g29964.t1
Valid prediction for GlimmerHMM_glimmerT_45163-T1
Valid prediction for GlimmerHMM_glimmerT_45158-T1
Valid prediction for CodingQuarry_transcript_25866-T1
Valid prediction for GlimmerHMM_glimmerT_45155-T1
Valid prediction for CodingQuarry_transcript_25869-T1
Valid prediction for GlimmerHMM_glimmerT_45148-T1
Valid prediction for snap_scaffold_19-snap.2541-T1
Couldn't classify 142895, 143599
Sorry, prediction pasa_asmbl_22563.p1 fails validation.
(CAG)	 GG	142895-143599	TC	AAT
Valid prediction for snap_scaffold_19-snap.2533-T1
Valid prediction for HiQ_model.g29963.t1
Valid prediction for snap_scaffold_19-snap.2547-T1
Valid prediction for GlimmerHMM_glimmerT_45152-T1
Valid prediction for pasa_asmbl_22578.p1
Valid prediction for snap_scaffold_19-snap.2527-T1
Couldn't classify 10776, 10862
Sorry, prediction pasa_asmbl_22592.p1 fails validation.
(ATG)	 AC	8422-8475	GT	GGG
(TTC)	 AG	9137-9211	GT	AGG
(ACC)	 AG	9969-10016	GT	GGG
(GTG)	 AG	10219-10287	GT	CGG
(GTC)	 AG	10776-10862	GT	AAG
-recovered pasa_asmbl_22592.p1, initial, 8422, 8475
-recovered pasa_asmbl_22592.p1, internal, 9137, 9211
-recovered pasa_asmbl_22592.p1, internal, 9969, 10016
-recovered pasa_asmbl_22592.p1, internal, 10219, 10287
-recovered pasa_asmbl_22592.p1, internal, 10776, 10862
Valid prediction for snap_scaffold_19-snap.2561-T1
Valid prediction for snap_scaffold_19-snap.2556-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for CodingQuarry_transcript_25876-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 34658, rend_intergenic: 25128  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46656, rend_intergenic: 38705  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94268, rend_intergenic: 90321  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111508, rend_intergenic: 108279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123895, rend_intergenic: 121586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130644, rend_intergenic: 124959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143749, rend_intergenic: 133762  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171433, rend_intergenic: 169138  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173224, rend_intergenic: 171616  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184341, rend_intergenic: 176108  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186940, rend_intergenic: 185173  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 196082
-exon list size: 584


building trellis

0.2    
0.3    
0.5    
0.7    
0.9    
1.0    
1.2    
1.4    
1.5    
1.7    
1.9    
2.0    
2.2    
2.4    
2.6    
2.7    
2.9    
3.1    
3.2    
3.4    
3.6    
3.8    
3.9    
4.1    
4.3    
4.4    
4.6    
4.8    
4.9    
5.1    
5.3    
5.5    
5.6    
5.8    
6.0    
6.1    
6.3    
6.5    
6.7    
6.8    
7.0    
7.2    
7.3    
7.5    
7.7    
7.8    
8.0    
8.2    
8.4    
8.5    
8.7    
8.9    
9.0    
9.2    
9.4    
9.6    
9.7    
9.9    
10.1    
10.2    
10.4    
10.6    
10.8    
10.9    
11.1    
11.3    
11.4    
11.6    
11.8    
11.9    
12.1    
12.3    
12.5    
12.6    
12.8    
13.0    
13.1    
13.3    
13.5    
13.7    
13.8    
14.0    
14.2    
14.3    
14.5    
14.7    
14.8    
15.0    
15.2    
15.4    
15.5    
15.7    
15.9    
16.0    
16.2    
16.4    
16.6    
16.7    
16.9    
17.1    
17.2    
17.4    
17.6    
17.7    
17.9    
18.1    
18.3    
18.4    
18.6    
18.8    
18.9    
19.1    
19.3    
19.5    
19.6    
19.8    
20.0    
20.1    
20.3    
20.5    
20.6    
20.8    
21.0    
21.2    
21.3    
21.5    
21.7    
21.8    
22.0    
22.2    
22.4    
22.5    
22.7    
22.9    
23.0    
23.2    
23.4    
23.5    
23.7    
23.9    
24.1    
24.2    
24.4    
24.6    
24.7    
24.9    
25.1    
25.3    
25.4    
25.6    
25.8    
25.9    
26.1    
26.3    
26.5    
26.6    
26.8    
27.0    
27.1    
27.3    
27.5    
27.6    
27.8    
28.0    
28.2    
28.3    
28.5    
28.7    
28.8    
29.0    
29.2    
29.4    
29.5    
29.7    
29.9    
30.0    
30.2    
30.4    
30.5    
30.7    
30.9    
31.1    
31.2    
31.4    
31.6    
31.7    
31.9    
32.1    
32.3    
32.4    
32.6    
32.8    
32.9    
33.1    
33.3    
33.4    
33.6    
33.8    
34.0    
34.1    
34.3    
34.5    
34.6    
34.8    
35.0    
35.2    
35.3    
35.5    
35.7    
35.8    
36.0    
36.2    
36.3    
36.5    
36.7    
36.9    
37.0    
37.2    
37.4    
37.5    
37.7    
37.9    
38.1    
38.2    
38.4    
38.6    
38.7    
38.9    
39.1    
39.2    
39.4    
39.6    
39.8    
39.9    
40.1    
40.3    
40.4    
40.6    
40.8    
41.0    
41.1    
41.3    
41.5    
41.6    
41.8    
42.0    
42.2    
42.3    
42.5    
42.7    
42.8    
43.0    
43.2    
43.3    
43.5    
43.7    
43.9    
44.0    
44.2    
44.4    
44.5    
44.7    
44.9    
45.1    
45.2    
45.4    
45.6    
45.7    
45.9    
46.1    
46.2    
46.4    
46.6    
46.8    
46.9    
47.1    
47.3    
47.4    
47.6    
47.8    
48.0    
48.1    
48.3    
48.5    
48.6    
48.8    
49.0    
49.1    
49.3    
49.5    
49.7    
49.8    
50.0    
50.2    
50.3    
50.5    
50.7    
50.9    
51.0    
51.2    
51.4    
51.5    
51.7    
51.9    
52.0    
52.2    
52.4    
52.6    
52.7    
52.9    
53.1    
53.2    
53.4    
53.6    
53.8    
53.9    
54.1    
54.3    
54.4    
54.6    
54.8    
54.9    
55.1    
55.3    
55.5    
55.6    
55.8    
56.0    
56.1    
56.3    
56.5    
56.7    
56.8    
57.0    
57.2    
57.3    
57.5    
57.7    
57.8    
58.0    
58.2    
58.4    
58.5    
58.7    
58.9    
59.0    
59.2    
59.4    
59.6    
59.7    
59.9    
60.1    
60.2    
60.4    
60.6    
60.8    
60.9    
61.1    
61.3    
61.4    
61.6    
61.8    
61.9    
62.1    
62.3    
62.5    
62.6    
62.8    
63.0    
63.1    
63.3    
63.5    
63.7    
63.8    
64.0    
64.2    
64.3    
64.5    
64.7    
64.8    
65.0    
65.2    
65.4    
65.5    
65.7    
65.9    
66.0    
66.2    
66.4    
66.6    
66.7    
66.9    
67.1    
67.2    
67.4    
67.6    
67.7    
67.9    
68.1    
68.3    
68.4    
68.6    
68.8    
68.9    
69.1    
69.3    
69.5    
69.6    
69.8    
70.0    
70.1    
70.3    
70.5    
70.6    
70.8    
71.0    
71.2    
71.3    
71.5    
71.7    
71.8    
72.0    
72.2    
72.4    
72.5    
72.7    
72.9    
73.0    
73.2    
73.4    
73.5    
73.7    
73.9    
74.1    
74.2    
74.4    
74.6    
74.7    
74.9    
75.1    
75.3    
75.4    
75.6    
75.8    
75.9    
76.1    
76.3    
76.5    
76.6    
76.8    
77.0    
77.1    
77.3    
77.5    
77.6    
77.8    
78.0    
78.2    
78.3    
78.5    
78.7    
78.8    
79.0    
79.2    
79.4    
79.5    
79.7    
79.9    
80.0    
80.2    
80.4    
80.5    
80.7    
80.9    
81.1    
81.2    
81.4    
81.6    
81.7    
81.9    
82.1    
82.3    
82.4    
82.6    
82.8    
82.9    
83.1    
83.3    
83.4    
83.6    
83.8    
84.0    
84.1    
84.3    
84.5    
84.6    
84.8    
85.0    
85.2    
85.3    
85.5    
85.7    
85.8    
86.0    
86.2    
86.3    
86.5    
86.7    
86.9    
87.0    
87.2    
87.4    
87.5    
87.7    
87.9    
88.1    
88.2    
88.4    
88.6    
88.7    
88.9    
89.1    
89.2    
89.4    
89.6    
89.8    
89.9    
90.1    
90.3    
90.4    
90.6    
90.8    
91.0    
91.1    
91.3    
91.5    
91.6    
91.8    
92.0    
92.2    
92.3    
92.5    
92.7    
92.8    
93.0    
93.2    
93.3    
93.5    
93.7    
93.9    
94.0    
94.2    
94.4    
94.5    
94.7    
94.9    
95.1    
95.2    
95.4    
95.6    
95.7    
95.9    
96.1    
96.2    
96.4    
96.6    
96.8    
96.9    
97.1    
97.3    
97.4    
97.6    
97.8    
98.0    
98.1    
98.3    
98.5    
98.6    
98.8    
99.0    
99.1    
99.3    
99.5    
99.7    
99.8    
-found 30 predictions from path traversal
Error with prediction: snap lend_intergenic: 34658, rend_intergenic: 25128  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46656, rend_intergenic: 38705  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94268, rend_intergenic: 90321  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111508, rend_intergenic: 108279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123895, rend_intergenic: 121586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130644, rend_intergenic: 124959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143749, rend_intergenic: 133762  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171433, rend_intergenic: 169138  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173224, rend_intergenic: 171616  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184341, rend_intergenic: 176108  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186940, rend_intergenic: 185173  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 28 predictions persist after filtering for low support