-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_19/scaffold_19_12415187-12735659

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_19-snap.2457-T1
Valid prediction for GlimmerHMM_glimmerT_45095-T1
Valid prediction for snap_scaffold_19-snap.2483-T1
Valid prediction for CodingQuarry_transcript_25848-T1
Valid prediction for snap_scaffold_19-snap.2447-T1
Valid prediction for GlimmerHMM_glimmerT_45082-T1
Valid prediction for Augustus_model.g29930.t1
Valid prediction for snap_scaffold_19-snap.2438-T1
Valid prediction for Augustus_model.g29916.t1
Valid prediction for snap_scaffold_19-snap.2463-T1
Valid prediction for Augustus_model.g29912.t1
Valid prediction for Augustus_model.g29910.t1
Valid prediction for snap_scaffold_19-snap.2455-T1
Valid prediction for snap_scaffold_19-snap.2437-T1
Valid prediction for GlimmerHMM_glimmerT_45109-T1
Valid prediction for snap_scaffold_19-snap.2460-T1
Valid prediction for GlimmerHMM_glimmerT_45107-T1
Valid prediction for GlimmerHMM_glimmerT_45075-T1
Valid prediction for pasa_asmbl_21818.p1
Valid prediction for snap_scaffold_19-snap.2466-T1
Valid prediction for GlimmerHMM_glimmerT_45076-T1
Valid prediction for snap_scaffold_19-snap.2427-T1
Valid prediction for snap_scaffold_19-snap.2439-T1
Valid prediction for snap_scaffold_19-snap.2480-T1
Valid prediction for GlimmerHMM_glimmerT_45105-T1
Valid prediction for Augustus_model.g29935.t1
Valid prediction for CodingQuarry_transcript_25852-T1
Valid prediction for Augustus_model.g29915.t1
Valid prediction for snap_scaffold_19-snap.2477-T1
Valid prediction for snap_scaffold_19-snap.2472-T1
Valid prediction for snap_scaffold_19-snap.2445-T1
Valid prediction for snap_scaffold_19-snap.2469-T1
Valid prediction for Augustus_model.g29926.t1
Valid prediction for GlimmerHMM_glimmerT_45102-T1
Valid prediction for snap_scaffold_19-snap.2433-T1
Valid prediction for GlimmerHMM_glimmerT_45090-T1
Valid prediction for Augustus_model.g29928.t1
Valid prediction for GlimmerHMM_glimmerT_45104-T1
Valid prediction for GlimmerHMM_glimmerT_45077-T1
Valid prediction for GlimmerHMM_glimmerT_45097-T1
Valid prediction for Augustus_model.g29932.t1
Valid prediction for GlimmerHMM_glimmerT_45073-T1
Valid prediction for Augustus_model.g29911.t1
Valid prediction for snap_scaffold_19-snap.2448-T1
Valid prediction for snap_scaffold_19-snap.2465-T1
Valid prediction for CodingQuarry_transcript_25853-T1
Valid prediction for Augustus_model.g29918.t1
Valid prediction for snap_scaffold_19-snap.2474-T1
Valid prediction for snap_scaffold_19-snap.2461-T1
Valid prediction for snap_scaffold_19-snap.2450-T1
Valid prediction for HiQ_model.g29906.t1
Valid prediction for GlimmerHMM_glimmerT_45108-T1
Valid prediction for HiQ_model.g29924.t1
Valid prediction for snap_scaffold_19-snap.2446-T1
Valid prediction for GlimmerHMM_glimmerT_45080-T1
Valid prediction for GlimmerHMM_glimmerT_45100-T1
Valid prediction for pasa_asmbl_21799.p1
Valid prediction for GlimmerHMM_glimmerT_45078-T1
Valid prediction for snap_scaffold_19-snap.2434-T1
Valid prediction for snap_scaffold_19-snap.2440-T1
Valid prediction for pasa_asmbl_21816.p1
Valid prediction for snap_scaffold_19-snap.2481-T1
Valid prediction for GlimmerHMM_glimmerT_45099-T1
Valid prediction for GlimmerHMM_glimmerT_45068-T1
Valid prediction for GlimmerHMM_glimmerT_45072-T1
Valid prediction for GlimmerHMM_glimmerT_45093-T1
Valid prediction for snap_scaffold_19-snap.2452-T1
Sorry, intron length (9) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_45071-T1
Valid prediction for GlimmerHMM_glimmerT_45101-T1
Valid prediction for Augustus_model.g29927.t1
Valid prediction for snap_scaffold_19-snap.2441-T1
Valid prediction for snap_scaffold_19-snap.2431-T1
Valid prediction for Augustus_model.g29921.t1
Valid prediction for snap_scaffold_19-snap.2479-T1
Valid prediction for Augustus_model.g29929.t1
Valid prediction for Augustus_model.g29914.t1
Valid prediction for snap_scaffold_19-snap.2435-T1
Valid prediction for HiQ_model.g29908.t1
Valid prediction for GlimmerHMM_glimmerT_45070-T1
Valid prediction for GlimmerHMM_glimmerT_45091-T1
Valid prediction for GlimmerHMM_glimmerT_45106-T1
Valid prediction for HiQ_model.g29907.t1
Valid prediction for snap_scaffold_19-snap.2453-T1
Valid prediction for GlimmerHMM_glimmerT_45103-T1
Valid prediction for snap_scaffold_19-snap.2478-T1
Valid prediction for snap_scaffold_19-snap.2426-T1
Valid prediction for CodingQuarry_transcript_25849-T1
Valid prediction for snap_scaffold_19-snap.2429-T1
Valid prediction for GlimmerHMM_glimmerT_45092-T1
Valid prediction for snap_scaffold_19-snap.2470-T1
Couldn't classify 152728, 152818
Couldn't classify 156521, 156582
Sorry, prediction pasa_asmbl_22522.p1 fails validation.
(AAG)	 CC	152728-152818	GT	CGG
(AGT)	 AG	153557-153637	GT	TGG
(GGA)	 AG	154003-154184	GT	AGG
(GGC)	 AG	154658-154799	GT	GTG
(CAA)	 AG	155900-155989	GT	AGG
(ATG)	 AG	156521-156582	AG	ACA
-recovered pasa_asmbl_22522.p1, internal, 153557, 153637
-recovered pasa_asmbl_22522.p1, internal, 154003, 154184
-recovered pasa_asmbl_22522.p1, internal, 154658, 154799
-recovered pasa_asmbl_22522.p1, internal, 155900, 155989
Valid prediction for Augustus_model.g29913.t1
Couldn't classify 242750, 243184
Sorry, prediction pasa_asmbl_22510.p1 fails validation.
(ATG)	 CC	242750-243184	GG	AAG
Valid prediction for Augustus_model.g29917.t1
Valid prediction for snap_scaffold_19-snap.2471-T1
Valid prediction for Augustus_model.g29922.t1
Valid prediction for snap_scaffold_19-snap.2458-T1
Valid prediction for GlimmerHMM_glimmerT_45094-T1
Valid prediction for GlimmerHMM_glimmerT_45083-T1
Valid prediction for GlimmerHMM_glimmerT_45089-T1
Valid prediction for GlimmerHMM_glimmerT_45087-T1
Valid prediction for snap_scaffold_19-snap.2454-T1
Valid prediction for snap_scaffold_19-snap.2473-T1
Valid prediction for Augustus_model.g29923.t1
Valid prediction for Augustus_model.g29919.t1
Valid prediction for CodingQuarry_transcript_25855-T1
Valid prediction for Augustus_model.g29909.t1
Valid prediction for Augustus_model.g29925.t1
Valid prediction for snap_scaffold_19-snap.2456-T1
Valid prediction for snap_scaffold_19-snap.2475-T1
Valid prediction for snap_scaffold_19-snap.2476-T1
Valid prediction for snap_scaffold_19-snap.2443-T1
Couldn't classify 151858, 152574
Sorry, prediction pasa_asmbl_22524.p1 fails validation.
(ATG)	 AG	151858-152574	TC	CCT
Valid prediction for GlimmerHMM_glimmerT_45079-T1
Couldn't classify 157081, 157489
Sorry, prediction pasa_asmbl_22518.p1 fails validation.
(CAG)	 TG	157081-157489	GT	TGG
(ACG)	 AG	157647-157733	GT	AGG
(CAA)	 AG	158312-158440	GT	AGG
(TCG)	 AG	158551-158646	GT	CGG
(GAT)	 AG	158770-158847	GT	AGG
(ATC)	 AG	159888-159959	GT	AGG
(TAT)	 AG	160209-160238	GT	TGG
(CAT)	 AG	160710-160878	GT	AAG
(GAT)	 AG	161010-161078	GT	AAG
(GTG)	 AG	161416-161445	GT	AAG
(GCT)	 AG	161878-162007	AA	GAA
-recovered pasa_asmbl_22518.p1, terminal, 161416, 161445
-recovered pasa_asmbl_22518.p1, terminal, 161878, 162007
-recovered pasa_asmbl_22518.p1, internal, 157647, 157733
-recovered pasa_asmbl_22518.p1, internal, 158312, 158440
-recovered pasa_asmbl_22518.p1, internal, 158551, 158646
-recovered pasa_asmbl_22518.p1, internal, 158770, 158847
-recovered pasa_asmbl_22518.p1, internal, 159888, 159959
-recovered pasa_asmbl_22518.p1, internal, 160209, 160238
-recovered pasa_asmbl_22518.p1, internal, 160710, 160878
-recovered pasa_asmbl_22518.p1, internal, 161010, 161078
-recovered pasa_asmbl_22518.p1, internal, 161416, 161445
Couldn't classify 226674, 226851
Sorry, prediction pasa_asmbl_22512.p1 fails validation.
(AAA)	 AC	226674-226851	GT	AGG
(GCT)	 AG	227083-227787	GT	AGG
(GAG)	 AG	228264-228277	AT	GAA
-recovered pasa_asmbl_22512.p1, terminal, 228264, 228277
-recovered pasa_asmbl_22512.p1, internal, 227083, 227787
Valid prediction for snap_scaffold_19-snap.2467-T1
Valid prediction for snap_scaffold_19-snap.2430-T1
Valid prediction for CodingQuarry_transcript_25850-T1
Valid prediction for GlimmerHMM_glimmerT_45086-T1
Valid prediction for GlimmerHMM_glimmerT_45069-T1
Valid prediction for GlimmerHMM_glimmerT_45074-T1
Valid prediction for pasa_asmbl_22486.p1
Valid prediction for snap_scaffold_19-snap.2459-T1
Valid prediction for GlimmerHMM_glimmerT_45096-T1
Valid prediction for snap_scaffold_19-snap.2464-T1
Valid prediction for CodingQuarry_transcript_25851-T1
Couldn't classify 205687, 205722
Sorry, prediction pasa_asmbl_22513.p1 fails validation.
(GTG)	 AG	205687-205722	GT	AGG
(GAA)	 AG	205896-206003	GT	TGG
(AGT)	 AG	206103-206174	GT	AAG
(CCT)	 AG	206390-206519	GT	CGG
(GTG)	 AG	206923-207026	GT	CGG
(CTG)	 AG	207351-207440	GT	GGG
(CTT)	 AG	207536-207577	GT	CAG
(GTT)	 AG	207877-208047	GT	AAG
(AAC)	 AG	208135-208216	GT	AAG
(ACA)	 AG	208304-208765	GT	AGG
(TGG)	 AG	208955-209163	GT	GGG
(GAG)	 AG	209343-209453	GT	AGG
(GTG)	 AG	209911-210133	GT	TGG
(CAG)	 AG	211587-211765	GT	AGG
(GAT)	 AG	211877-212183	GT	TGG
(GCC)	 AG	212813-212922	GT	AGG
(ATG)	 AG	213408-213505	GT	CAG
(AGG)	 AG	213823-214004	GC	AGG
(GTG)	 AG	216889-216973	GT	TGG
(GTC)	 AG	218027-218109	GT	AGG
(AGG)	 AG	218959-219185	GT	AGG
(ATC)	 AG	219366-219503	AG	AAA
-recovered pasa_asmbl_22513.p1, initial, 213408, 213505
-recovered pasa_asmbl_22513.p1, terminal, 219366, 219503
-recovered pasa_asmbl_22513.p1, internal, 205687, 205722
-recovered pasa_asmbl_22513.p1, internal, 205896, 206003
-recovered pasa_asmbl_22513.p1, internal, 206103, 206174
-recovered pasa_asmbl_22513.p1, internal, 206390, 206519
-recovered pasa_asmbl_22513.p1, internal, 206923, 207026
-recovered pasa_asmbl_22513.p1, internal, 207351, 207440
-recovered pasa_asmbl_22513.p1, internal, 207536, 207577
-recovered pasa_asmbl_22513.p1, internal, 207877, 208047
-recovered pasa_asmbl_22513.p1, internal, 208135, 208216
-recovered pasa_asmbl_22513.p1, internal, 208304, 208765
-recovered pasa_asmbl_22513.p1, internal, 208955, 209163
-recovered pasa_asmbl_22513.p1, internal, 209343, 209453
-recovered pasa_asmbl_22513.p1, internal, 209911, 210133
-recovered pasa_asmbl_22513.p1, internal, 211587, 211765
-recovered pasa_asmbl_22513.p1, internal, 211877, 212183
-recovered pasa_asmbl_22513.p1, internal, 212813, 212922
-recovered pasa_asmbl_22513.p1, internal, 213408, 213505
-recovered pasa_asmbl_22513.p1, internal, 213823, 214004
-recovered pasa_asmbl_22513.p1, internal, 216889, 216973
-recovered pasa_asmbl_22513.p1, internal, 218027, 218109
-recovered pasa_asmbl_22513.p1, internal, 218959, 219185
Valid prediction for pasa_asmbl_22527.p1
Valid prediction for snap_scaffold_19-snap.2432-T1
Valid prediction for snap_scaffold_19-snap.2482-T1
Valid prediction for snap_scaffold_19-snap.2451-T1
Valid prediction for pasa_asmbl_22488.p1
Valid prediction for pasa_asmbl_22487.p1
Valid prediction for snap_scaffold_19-snap.2442-T1
Valid prediction for GlimmerHMM_glimmerT_45084-T1
Valid prediction for snap_scaffold_19-snap.2436-T1
Valid prediction for snap_scaffold_19-snap.2462-T1
Valid prediction for Augustus_model.g29920.t1
Valid prediction for Augustus_model.g29933.t1
Valid prediction for snap_scaffold_19-snap.2449-T1
Valid prediction for snap_scaffold_19-snap.2428-T1
Valid prediction for pasa_asmbl_22504.p1
Valid prediction for Augustus_model.g29934.t1
Valid prediction for GlimmerHMM_glimmerT_45098-T1
Valid prediction for GlimmerHMM_glimmerT_45081-T1
Couldn't classify 187939, 187977
Sorry, prediction pasa_asmbl_22515.p1 fails validation.
(GCT)	 CA	187939-187977	GT	AGG
(GTA)	 AG	188130-188282	GT	TAG
(GGT)	 AG	188382-188501	GT	AGG
(TGT)	 AG	188713-188844	AA	AAA
-recovered pasa_asmbl_22515.p1, terminal, 188713, 188844
-recovered pasa_asmbl_22515.p1, internal, 188130, 188282
-recovered pasa_asmbl_22515.p1, internal, 188382, 188501
Valid prediction for HiQ_model.g29931.t1
Valid prediction for snap_scaffold_19-snap.2444-T1
Valid prediction for snap_scaffold_19-snap.2468-T1
Valid prediction for CodingQuarry_transcript_25854-T1
Valid prediction for GlimmerHMM_glimmerT_45085-T1
Valid prediction for GlimmerHMM_glimmerT_45088-T1
Couldn't classify 69841, 69990
Couldn't classify 70923, 71117
Sorry, prediction pasa_asmbl_22526.p1 fails validation.
(CTA)	 CC	69841-69990	GT	AGG
(TTT)	 AG	70184-70309	GT	TGG
(ATA)	 AG	70923-71117	CG	GCC
-recovered pasa_asmbl_22526.p1, internal, 70184, 70309

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 213500, rend_intergenic: 213497  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116089, rend_intergenic: 111642  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162571, rend_intergenic: 160123  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163414, rend_intergenic: 162628  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174979, rend_intergenic: 170427  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185184, rend_intergenic: 176107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197190, rend_intergenic: 187447  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210789, rend_intergenic: 199579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217338, rend_intergenic: 211098  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225620, rend_intergenic: 223313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 230075, rend_intergenic: 225741  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 251847, rend_intergenic: 249067  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 257171, rend_intergenic: 254206  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 290007, rend_intergenic: 285630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 320473
-exon list size: 609


building trellis

0.2    
0.3    
0.5    
0.7    
0.8    
1.0    
1.1    
1.3    
1.5    
1.6    
1.8    
2.0    
2.1    
2.3    
2.5    
2.6    
2.8    
2.9    
3.1    
3.3    
3.4    
3.6    
3.8    
3.9    
4.1    
4.3    
4.4    
4.6    
4.7    
4.9    
5.1    
5.2    
5.4    
5.6    
5.7    
5.9    
6.1    
6.2    
6.4    
6.5    
6.7    
6.9    
7.0    
7.2    
7.4    
7.5    
7.7    
7.9    
8.0    
8.2    
8.3    
8.5    
8.7    
8.8    
9.0    
9.2    
9.3    
9.5    
9.7    
9.8    
10.0    
10.1    
10.3    
10.5    
10.6    
10.8    
11.0    
11.1    
11.3    
11.5    
11.6    
11.8    
11.9    
12.1    
12.3    
12.4    
12.6    
12.8    
12.9    
13.1    
13.3    
13.4    
13.6    
13.7    
13.9    
14.1    
14.2    
14.4    
14.6    
14.7    
14.9    
15.1    
15.2    
15.4    
15.5    
15.7    
15.9    
16.0    
16.2    
16.4    
16.5    
16.7    
16.9    
17.0    
17.2    
17.3    
17.5    
17.7    
17.8    
18.0    
18.2    
18.3    
18.5    
18.7    
18.8    
19.0    
19.1    
19.3    
19.5    
19.6    
19.8    
20.0    
20.1    
20.3    
20.5    
20.6    
20.8    
20.9    
21.1    
21.3    
21.4    
21.6    
21.8    
21.9    
22.1    
22.3    
22.4    
22.6    
22.7    
22.9    
23.1    
23.2    
23.4    
23.6    
23.7    
23.9    
24.1    
24.2    
24.4    
24.5    
24.7    
24.9    
25.0    
25.2    
25.4    
25.5    
25.7    
25.9    
26.0    
26.2    
26.4    
26.5    
26.7    
26.8    
27.0    
27.2    
27.3    
27.5    
27.7    
27.8    
28.0    
28.2    
28.3    
28.5    
28.6    
28.8    
29.0    
29.1    
29.3    
29.5    
29.6    
29.8    
30.0    
30.1    
30.3    
30.4    
30.6    
30.8    
30.9    
31.1    
31.3    
31.4    
31.6    
31.8    
31.9    
32.1    
32.2    
32.4    
32.6    
32.7    
32.9    
33.1    
33.2    
33.4    
33.6    
33.7    
33.9    
34.0    
34.2    
34.4    
34.5    
34.7    
34.9    
35.0    
35.2    
35.4    
35.5    
35.7    
35.8    
36.0    
36.2    
36.3    
36.5    
36.7    
36.8    
37.0    
37.2    
37.3    
37.5    
37.6    
37.8    
38.0    
38.1    
38.3    
38.5    
38.6    
38.8    
39.0    
39.1    
39.3    
39.4    
39.6    
39.8    
39.9    
40.1    
40.3    
40.4    
40.6    
40.8    
40.9    
41.1    
41.2    
41.4    
41.6    
41.7    
41.9    
42.1    
42.2    
42.4    
42.6    
42.7    
42.9    
43.0    
43.2    
43.4    
43.5    
43.7    
43.9    
44.0    
44.2    
44.4    
44.5    
44.7    
44.8    
45.0    
45.2    
45.3    
45.5    
45.7    
45.8    
46.0    
46.2    
46.3    
46.5    
46.6    
46.8    
47.0    
47.1    
47.3    
47.5    
47.6    
47.8    
48.0    
48.1    
48.3    
48.4    
48.6    
48.8    
48.9    
49.1    
49.3    
49.4    
49.6    
49.8    
49.9    
50.1    
50.2    
50.4    
50.6    
50.7    
50.9    
51.1    
51.2    
51.4    
51.6    
51.7    
51.9    
52.0    
52.2    
52.4    
52.5    
52.7    
52.9    
53.0    
53.2    
53.4    
53.5    
53.7    
53.8    
54.0    
54.2    
54.3    
54.5    
54.7    
54.8    
55.0    
55.2    
55.3    
55.5    
55.6    
55.8    
56.0    
56.1    
56.3    
56.5    
56.6    
56.8    
57.0    
57.1    
57.3    
57.4    
57.6    
57.8    
57.9    
58.1    
58.3    
58.4    
58.6    
58.8    
58.9    
59.1    
59.2    
59.4    
59.6    
59.7    
59.9    
60.1    
60.2    
60.4    
60.6    
60.7    
60.9    
61.0    
61.2    
61.4    
61.5    
61.7    
61.9    
62.0    
62.2    
62.4    
62.5    
62.7    
62.8    
63.0    
63.2    
63.3    
63.5    
63.7    
63.8    
64.0    
64.2    
64.3    
64.5    
64.6    
64.8    
65.0    
65.1    
65.3    
65.5    
65.6    
65.8    
66.0    
66.1    
66.3    
66.4    
66.6    
66.8    
66.9    
67.1    
67.3    
67.4    
67.6    
67.8    
67.9    
68.1    
68.2    
68.4    
68.6    
68.7    
68.9    
69.1    
69.2    
69.4    
69.6    
69.7    
69.9    
70.0    
70.2    
70.4    
70.5    
70.7    
70.9    
71.0    
71.2    
71.4    
71.5    
71.7    
71.8    
72.0    
72.2    
72.3    
72.5    
72.7    
72.8    
73.0    
73.2    
73.3    
73.5    
73.6    
73.8    
74.0    
74.1    
74.3    
74.5    
74.6    
74.8    
75.0    
75.1    
75.3    
75.5    
75.6    
75.8    
75.9    
76.1    
76.3    
76.4    
76.6    
76.8    
76.9    
77.1    
77.3    
77.4    
77.6    
77.7    
77.9    
78.1    
78.2    
78.4    
78.6    
78.7    
78.9    
79.1    
79.2    
79.4    
79.5    
79.7    
79.9    
80.0    
80.2    
80.4    
80.5    
80.7    
80.9    
81.0    
81.2    
81.3    
81.5    
81.7    
81.8    
82.0    
82.2    
82.3    
82.5    
82.7    
82.8    
83.0    
83.1    
83.3    
83.5    
83.6    
83.8    
84.0    
84.1    
84.3    
84.5    
84.6    
84.8    
84.9    
85.1    
85.3    
85.4    
85.6    
85.8    
85.9    
86.1    
86.3    
86.4    
86.6    
86.7    
86.9    
87.1    
87.2    
87.4    
87.6    
87.7    
87.9    
88.1    
88.2    
88.4    
88.5    
88.7    
88.9    
89.0    
89.2    
89.4    
89.5    
89.7    
89.9    
90.0    
90.2    
90.3    
90.5    
90.7    
90.8    
91.0    
91.2    
91.3    
91.5    
91.7    
91.8    
92.0    
92.1    
92.3    
92.5    
92.6    
92.8    
93.0    
93.1    
93.3    
93.5    
93.6    
93.8    
93.9    
94.1    
94.3    
94.4    
94.6    
94.8    
94.9    
95.1    
95.3    
95.4    
95.6    
95.7    
95.9    
96.1    
96.2    
96.4    
96.6    
96.7    
96.9    
97.1    
97.2    
97.4    
97.5    
97.7    
97.9    
98.0    
98.2    
98.4    
98.5    
98.7    
98.9    
99.0    
99.2    
99.3    
99.5    
99.7    
99.8    
-found 42 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 213500, rend_intergenic: 213497  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116089, rend_intergenic: 111642  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162571, rend_intergenic: 160123  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163414, rend_intergenic: 162628  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174979, rend_intergenic: 170427  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185184, rend_intergenic: 176107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197190, rend_intergenic: 187447  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210789, rend_intergenic: 199579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217338, rend_intergenic: 211098  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225620, rend_intergenic: 223313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 230075, rend_intergenic: 225741  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 251847, rend_intergenic: 249067  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 257171, rend_intergenic: 254206  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 290007, rend_intergenic: 285630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 35 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10486
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support