-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_19/scaffold_19_12033340-12261984 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 42106, 42369 Sorry, prediction pasa_asmbl_21738.p1 fails validation. (GTG) GT 42106-42369 GT AGG (GAG) AG 42496-42644 GT AGG (GAC) AG 42742-42904 GT TGG (CAG) AG 43020-43184 GT AGG (GTT) AG 43272-43352 GT AGG (GTG) AG 43522-43773 GT AGG (GCA) AG 43959-44156 GT AGG (ATC) AG 44438-44650 GT AGG (GCT) AG 44840-44947 CC GAC -recovered pasa_asmbl_21738.p1, terminal, 44840, 44947 -recovered pasa_asmbl_21738.p1, internal, 42496, 42644 -recovered pasa_asmbl_21738.p1, internal, 42742, 42904 -recovered pasa_asmbl_21738.p1, internal, 43020, 43184 -recovered pasa_asmbl_21738.p1, internal, 43272, 43352 -recovered pasa_asmbl_21738.p1, internal, 43522, 43773 -recovered pasa_asmbl_21738.p1, internal, 43959, 44156 -recovered pasa_asmbl_21738.p1, internal, 44438, 44650 Valid prediction for snap_scaffold_19-snap.2374-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_45023-T1 Valid prediction for snap_scaffold_19-snap.2350-T1 Valid prediction for snap_scaffold_19-snap.2368-T1 Valid prediction for GlimmerHMM_glimmerT_45040-T1 Valid prediction for snap_scaffold_19-snap.2389-T1 Valid prediction for GlimmerHMM_glimmerT_45007-T1 Valid prediction for GlimmerHMM_glimmerT_45031-T1 Valid prediction for GlimmerHMM_glimmerT_45028-T1 Couldn't classify 70832, 71061 Sorry, prediction pasa_asmbl_21741.p1 fails validation. (CCT) AG 70832-71061 GT AGG (GTC) AG 71141-71333 GT AGG (GTG) AG 71426-71600 GT AGG (GGC) AG 71715-71799 GT CAG (AAA) AG 72001-72081 GT TAG (CCT) AG 72195-72318 GT AGG (ATT) AG 72567-72710 AG GAA -recovered pasa_asmbl_21741.p1, terminal, 72567, 72710 -recovered pasa_asmbl_21741.p1, internal, 70832, 71061 -recovered pasa_asmbl_21741.p1, internal, 71141, 71333 -recovered pasa_asmbl_21741.p1, internal, 71426, 71600 -recovered pasa_asmbl_21741.p1, internal, 71715, 71799 -recovered pasa_asmbl_21741.p1, internal, 72001, 72081 -recovered pasa_asmbl_21741.p1, internal, 72195, 72318 Valid prediction for pasa_asmbl_21765.p1 Valid prediction for snap_scaffold_19-snap.2395-T1 Valid prediction for snap_scaffold_19-snap.2342-T1 Valid prediction for Augustus_model.g29873.t1 Valid prediction for HiQ_model.g29858.t1 Valid prediction for snap_scaffold_19-snap.2348-T1 Valid prediction for CodingQuarry_transcript_25829-T1 Valid prediction for snap_scaffold_19-snap.2373-T1 Couldn't classify 80479, 80590 Sorry, prediction pasa_asmbl_21743.p1 fails validation. (ATG) TC 79607-79634 GT AGG (GGA) AG 79757-79852 GT CGG (GCG) AG 80004-80067 GT TGG (GGC) AG 80479-80590 CC CCC -recovered pasa_asmbl_21743.p1, initial, 79607, 79634 -recovered pasa_asmbl_21743.p1, internal, 79757, 79852 -recovered pasa_asmbl_21743.p1, internal, 80004, 80067 Valid prediction for GlimmerHMM_glimmerT_45041-T1 Couldn't classify 93528, 93680 Sorry, prediction pasa_asmbl_21750.p1 fails validation. (CCA) CT 93528-93680 GT AGG (CAA) AG 93774-93986 GT CCG (CCC) AG 94087-94208 GT AGG (GAC) AG 94361-94443 GT GGG (TAA) AG 94613-94696 GT CGG (GGA) AG 94839-95012 GT CGG (ACT) AG 95293-95441 TC AGT -recovered pasa_asmbl_21750.p1, terminal, 95293, 95441 -recovered pasa_asmbl_21750.p1, internal, 93774, 93986 -recovered pasa_asmbl_21750.p1, internal, 94087, 94208 -recovered pasa_asmbl_21750.p1, internal, 94361, 94443 -recovered pasa_asmbl_21750.p1, internal, 94613, 94696 -recovered pasa_asmbl_21750.p1, internal, 94839, 95012 Valid prediction for snap_scaffold_19-snap.2343-T1 Valid prediction for GlimmerHMM_glimmerT_45045-T1 Valid prediction for snap_scaffold_19-snap.2385-T1 Valid prediction for HiQ_model.g29871.t1 Valid prediction for HiQ_model.g29870.t1 Valid prediction for GlimmerHMM_glimmerT_45020-T1 Valid prediction for snap_scaffold_19-snap.2394-T1 Valid prediction for pasa_asmbl_21736.p1 Valid prediction for snap_scaffold_19-snap.2369-T1 Valid prediction for GlimmerHMM_glimmerT_45018-T1 Valid prediction for GlimmerHMM_glimmerT_45025-T1 Valid prediction for GlimmerHMM_glimmerT_45011-T1 Valid prediction for snap_scaffold_19-snap.2371-T1 Valid prediction for Augustus_model.g29874.t1 Valid prediction for snap_scaffold_19-snap.2358-T1 Valid prediction for CodingQuarry_transcript_25831-T1 Valid prediction for CodingQuarry_transcript_25824-T1 Valid prediction for GlimmerHMM_glimmerT_45014-T1 Valid prediction for HiQ_model.g29883.t1 Valid prediction for pasa_asmbl_21762.p1 Couldn't classify 225715, 227259 Sorry, prediction pasa_asmbl_21775.p1 fails validation. (GTC) CT 225715-227259 GG AGG Valid prediction for Augustus_model.g29878.t1 Valid prediction for HiQ_model.g29881.t1 Valid prediction for CodingQuarry_transcript_25820-T1 Couldn't classify 222177, 222401 Couldn't classify 224838, 224867 Sorry, prediction pasa_asmbl_21773.p1 fails validation. (TTC) GT 222177-222401 GT AGG (GAG) AG 224443-224712 GT AGG (GAC) AG 224838-224867 AC AGA -recovered pasa_asmbl_21773.p1, internal, 224443, 224712 Valid prediction for Augustus_model.g29865.t1 Valid prediction for HiQ_model.g29868.t1 Valid prediction for snap_scaffold_19-snap.2388-T1 Valid prediction for HiQ_model.g29884.t1 Valid prediction for pasa_asmbl_21759.p1 Valid prediction for HiQ_model.g29875.t1 Valid prediction for Augustus_model.g29856.t1 Valid prediction for CodingQuarry_transcript_25837-T1 Valid prediction for pasa_asmbl_21760.p1 Valid prediction for pasa_asmbl_21755.p1 Valid prediction for GlimmerHMM_glimmerT_45010-T1 Valid prediction for CodingQuarry_transcript_25839-T1 Valid prediction for pasa_asmbl_21767.p1 Valid prediction for Augustus_model.g29882.t1 Valid prediction for GlimmerHMM_glimmerT_45008-T1 Valid prediction for snap_scaffold_19-snap.2361-T1 Valid prediction for GlimmerHMM_glimmerT_45026-T1 Valid prediction for snap_scaffold_19-snap.2346-T1 Valid prediction for snap_scaffold_19-snap.2382-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for Augustus_model.g29876.t1 Valid prediction for GlimmerHMM_glimmerT_45017-T1 Valid prediction for pasa_asmbl_21768.p2 Valid prediction for Augustus_model.g29854.t1 Valid prediction for GlimmerHMM_glimmerT_45029-T1 Valid prediction for pasa_asmbl_21751.p1 Valid prediction for Augustus_model.g29869.t1 Couldn't classify 85404, 85554 Couldn't classify 89603, 89604 Sorry, prediction pasa_asmbl_21747.p1 fails validation. (GGC) GC 85404-85554 GT AGG (AGA) AG 85657-85778 GT TGG (GTG) AG 86340-86716 GT ACG (GTG) AG 86854-87013 GT AGG (GGT) AG 87210-87418 GT AGG (TGT) AG 87562-87644 GT AGG (AGT) AG 87746-87912 GT ATG (GGG) AG 88015-88060 GT AGG (AGA) AG 88157-88278 GT AGG (GCC) AG 88433-88556 GT AGG (CAG) AG 88672-88866 GT ATG (GAG) AG 89603-89604 GT GAG -recovered pasa_asmbl_21747.p1, internal, 85657, 85778 -recovered pasa_asmbl_21747.p1, internal, 86340, 86716 -recovered pasa_asmbl_21747.p1, internal, 86854, 87013 -recovered pasa_asmbl_21747.p1, internal, 87210, 87418 -recovered pasa_asmbl_21747.p1, internal, 87562, 87644 -recovered pasa_asmbl_21747.p1, internal, 87746, 87912 -recovered pasa_asmbl_21747.p1, internal, 88015, 88060 -recovered pasa_asmbl_21747.p1, internal, 88157, 88278 -recovered pasa_asmbl_21747.p1, internal, 88433, 88556 -recovered pasa_asmbl_21747.p1, internal, 88672, 88866 -recovered pasa_asmbl_21747.p1, internal, 89603, 89604 Valid prediction for GlimmerHMM_glimmerT_45012-T1 Valid prediction for snap_scaffold_19-snap.2357-T1 Valid prediction for HiQ_model.g29867.t1 Valid prediction for snap_scaffold_19-snap.2392-T1 Valid prediction for GlimmerHMM_glimmerT_45037-T1 Valid prediction for snap_scaffold_19-snap.2364-T1 Valid prediction for snap_scaffold_19-snap.2356-T1 Valid prediction for snap_scaffold_19-snap.2340-T1 Valid prediction for Augustus_model.g29863.t1 Valid prediction for Augustus_model.g29888.t1 Valid prediction for CodingQuarry_transcript_25833-T1 Valid prediction for snap_scaffold_19-snap.2380-T1 Valid prediction for CodingQuarry_transcript_25836-T1 Valid prediction for HiQ_model.g29887.t1 Couldn't classify 80910, 80976 Couldn't classify 84666, 84844 Sorry, prediction pasa_asmbl_21744.p1 fails validation. (CCT) CT 80910-80976 GT AGG (GCC) AG 81257-81329 GT AGG (TGT) AG 81426-81535 GT TGG (GCC) AG 81644-81707 GT TGG (GAA) AG 81807-81944 GT AGG (GCG) AG 82020-82132 GT AGG (TGA) AG 82349-82611 GT AGG (GCG) AG 82698-82847 GT TGG (AGT) AG 83083-83223 GT AGG (GAC) AG 83323-83410 GT CCG (GAG) AG 84666-84844 CC GCC -recovered pasa_asmbl_21744.p1, internal, 81257, 81329 -recovered pasa_asmbl_21744.p1, internal, 81426, 81535 -recovered pasa_asmbl_21744.p1, internal, 81644, 81707 -recovered pasa_asmbl_21744.p1, internal, 81807, 81944 -recovered pasa_asmbl_21744.p1, internal, 82020, 82132 -recovered pasa_asmbl_21744.p1, internal, 82349, 82611 -recovered pasa_asmbl_21744.p1, internal, 82698, 82847 -recovered pasa_asmbl_21744.p1, internal, 83083, 83223 -recovered pasa_asmbl_21744.p1, internal, 83323, 83410 Valid prediction for GlimmerHMM_glimmerT_45038-T1 Valid prediction for GlimmerHMM_glimmerT_45042-T1 Valid prediction for pasa_asmbl_21770.p1 Valid prediction for CodingQuarry_transcript_25830-T1 Valid prediction for snap_scaffold_19-snap.2344-T1 Valid prediction for Augustus_model.g29857.t1 Couldn't classify 92392, 92514 Couldn't classify 93303, 93371 Sorry, prediction pasa_asmbl_21749.p2 fails validation. (GGG) CA 92392-92514 GT AGG (GTG) AG 92752-92858 GT AAG (GGC) AG 93010-93193 GT AGG (AGG) AG 93303-93371 GT GGG -recovered pasa_asmbl_21749.p2, internal, 92752, 92858 -recovered pasa_asmbl_21749.p2, internal, 93010, 93193 -recovered pasa_asmbl_21749.p2, internal, 93303, 93371 Valid prediction for CodingQuarry_transcript_25834-T1 Valid prediction for snap_scaffold_19-snap.2379-T1 Valid prediction for snap_scaffold_19-snap.2366-T1 Valid prediction for CodingQuarry_transcript_25832-T1 Valid prediction for GlimmerHMM_glimmerT_45039-T1 Valid prediction for snap_scaffold_19-snap.2386-T1 Valid prediction for snap_scaffold_19-snap.2351-T1 Valid prediction for GlimmerHMM_glimmerT_45022-T1 Valid prediction for GlimmerHMM_glimmerT_45027-T1 Valid prediction for Augustus_model.g29860.t1 Valid prediction for CodingQuarry_transcript_25835-T1 Valid prediction for snap_scaffold_19-snap.2390-T1 Valid prediction for GlimmerHMM_glimmerT_45036-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_19-snap.2363-T1 Valid prediction for Augustus_model.g29879.t1 Valid prediction for GlimmerHMM_glimmerT_45030-T1 Valid prediction for snap_scaffold_19-snap.2387-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for snap_scaffold_19-snap.2345-T1 Valid prediction for Augustus_model.g29859.t1 Valid prediction for GlimmerHMM_glimmerT_45019-T1 Valid prediction for snap_scaffold_19-snap.2354-T1 Valid prediction for GlimmerHMM_glimmerT_45006-T1 Valid prediction for snap_scaffold_19-snap.2372-T1 Valid prediction for CodingQuarry_transcript_25827-T1 Valid prediction for HiQ_model.g29861.t1 Valid prediction for pasa_asmbl_22457.p1 Valid prediction for snap_scaffold_19-snap.2378-T1 Valid prediction for GlimmerHMM_glimmerT_45024-T1 Valid prediction for Augustus_model.g29853.t1 Valid prediction for CodingQuarry_transcript_25819-T1 Valid prediction for CodingQuarry_transcript_25826-T1 Valid prediction for snap_scaffold_19-snap.2384-T1 Valid prediction for snap_scaffold_19-snap.2383-T1 Valid prediction for snap_scaffold_19-snap.2376-T1 Valid prediction for snap_scaffold_19-snap.2367-T1 Couldn't classify 14820, 14974 Sorry, prediction pasa_asmbl_22472.p1 fails validation. (AGC) AG 14820-14974 GT TGG (CCG) AG 15087-15279 CC AGC -recovered pasa_asmbl_22472.p1, terminal, 15087, 15279 -recovered pasa_asmbl_22472.p1, internal, 14820, 14974 Valid prediction for Augustus_model.g29885.t1 Valid prediction for GlimmerHMM_glimmerT_45043-T1 Valid prediction for Augustus_model.g29855.t1 Valid prediction for snap_scaffold_19-snap.2377-T1 Valid prediction for HiQ_model.g29886.t1 Valid prediction for snap_scaffold_19-snap.2391-T1 Valid prediction for snap_scaffold_19-snap.2341-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for snap_scaffold_19-snap.2359-T1 Valid prediction for GlimmerHMM_glimmerT_45044-T1 Couldn't classify 198507, 198580 Couldn't classify 199780, 199949 Sorry, prediction pasa_asmbl_22445.p1 fails validation. (GAG) CG 198507-198580 GT CAG (CTC) AG 198901-198931 GT TGG (CTG) AG 199112-199252 GT AGG (GCT) AG 199472-199613 GT GGG (GCC) AG 199780-199949 GC AGG -recovered pasa_asmbl_22445.p1, internal, 198901, 198931 -recovered pasa_asmbl_22445.p1, internal, 199112, 199252 -recovered pasa_asmbl_22445.p1, internal, 199472, 199613 -recovered pasa_asmbl_22445.p1, internal, 199780, 199949 Valid prediction for CodingQuarry_transcript_25822-T1 Valid prediction for snap_scaffold_19-snap.2396-T1 Valid prediction for GlimmerHMM_glimmerT_45013-T1 Valid prediction for CodingQuarry_transcript_25838-T1 Couldn't classify 63681, 63776 Sorry, prediction pasa_asmbl_22463.p1 fails validation. (GGT) GT 63681-63776 GT AGG (GCT) AG 63956-64062 GT AAG (ACA) AG 64168-64300 GT AGG (AAC) AG 64411-64492 GT AGG (TGG) AG 64591-64649 GT AGG (GCC) AG 64829-64974 GT TGG (CTT) AG 65295-65427 GT AGG (CGG) AG 65776-65895 GT AGG (CTG) AG 66120-66259 GT AAG (TCT) AG 66521-66652 GT AAG (GTC) AG 66903-67121 GT TGG (GTA) AG 67251-67381 GT TGG (AGA) AG 67496-67593 GT AGG (AAA) AG 67669-67762 GT CTG (CTG) AG 68221-68303 GT ACG (GTG) AG 68409-68489 GT AGG (GTG) AG 68592-68685 GT TGG (AGA) AG 68767-68883 GT AGG (GCC) AG 69007-69116 GT CTG (CTG) AG 69210-69299 GT TGG (ATC) AG 69416-69532 AC AGA -recovered pasa_asmbl_22463.p1, terminal, 69416, 69532 -recovered pasa_asmbl_22463.p1, internal, 63956, 64062 -recovered pasa_asmbl_22463.p1, internal, 64168, 64300 -recovered pasa_asmbl_22463.p1, internal, 64411, 64492 -recovered pasa_asmbl_22463.p1, internal, 64591, 64649 -recovered pasa_asmbl_22463.p1, internal, 64829, 64974 -recovered pasa_asmbl_22463.p1, internal, 65295, 65427 -recovered pasa_asmbl_22463.p1, internal, 65776, 65895 -recovered pasa_asmbl_22463.p1, internal, 66120, 66259 -recovered pasa_asmbl_22463.p1, internal, 66521, 66652 -recovered pasa_asmbl_22463.p1, internal, 66903, 67121 -recovered pasa_asmbl_22463.p1, internal, 67251, 67381 -recovered pasa_asmbl_22463.p1, internal, 67496, 67593 -recovered pasa_asmbl_22463.p1, internal, 67669, 67762 -recovered pasa_asmbl_22463.p1, internal, 68221, 68303 -recovered pasa_asmbl_22463.p1, internal, 68409, 68489 -recovered pasa_asmbl_22463.p1, internal, 68592, 68685 -recovered pasa_asmbl_22463.p1, internal, 68767, 68883 -recovered pasa_asmbl_22463.p1, internal, 69007, 69116 -recovered pasa_asmbl_22463.p1, internal, 69210, 69299 Valid prediction for GlimmerHMM_glimmerT_45021-T1 Couldn't classify 181362, 181430 Sorry, prediction pasa_asmbl_22447.p1 fails validation. (GGG) AG 181362-181430 GT AGG (AGG) AG 181530-181623 GT AGG (ATA) AG 181784-181914 GT AGG (AGG) AG 182087-182162 GT TGG (CTA) AG 182312-182424 GT AGG (ATT) AG 182598-182702 GT AGG (GTA) AG 182873-182998 GT AGG (AAC) AG 183083-183172 GT CGG (AGC) AG 183280-183321 GT GAG -recovered pasa_asmbl_22447.p1, terminal, 183280, 183321 -recovered pasa_asmbl_22447.p1, internal, 181362, 181430 -recovered pasa_asmbl_22447.p1, internal, 181530, 181623 -recovered pasa_asmbl_22447.p1, internal, 181784, 181914 -recovered pasa_asmbl_22447.p1, internal, 182087, 182162 -recovered pasa_asmbl_22447.p1, internal, 182312, 182424 -recovered pasa_asmbl_22447.p1, internal, 182598, 182702 -recovered pasa_asmbl_22447.p1, internal, 182873, 182998 -recovered pasa_asmbl_22447.p1, internal, 183083, 183172 -recovered pasa_asmbl_22447.p1, internal, 183280, 183321 Valid prediction for snap_scaffold_19-snap.2375-T1 Valid prediction for GlimmerHMM_glimmerT_45005-T1 Valid prediction for snap_scaffold_19-snap.2393-T1 Valid prediction for Augustus_model.g29872.t1 Valid prediction for CodingQuarry_transcript_25828-T1 Valid prediction for snap_scaffold_19-snap.2353-T1 Couldn't classify 159294, 159369 Sorry, prediction pasa_asmbl_22452.p1 fails validation. (CTT) AC 159294-159369 GT AAG (AAC) AG 159662-159949 GT AAG (TGG) AG 160054-160161 GT AGG (GCA) AG 160320-160528 GT CAG (GTG) AG 160982-161209 CC AAC -recovered pasa_asmbl_22452.p1, terminal, 160982, 161209 -recovered pasa_asmbl_22452.p1, internal, 159662, 159949 -recovered pasa_asmbl_22452.p1, internal, 160054, 160161 -recovered pasa_asmbl_22452.p1, internal, 160320, 160528 Valid prediction for snap_scaffold_19-snap.2370-T1 Valid prediction for HiQ_model.g29862.t1 Valid prediction for snap_scaffold_19-snap.2355-T1 Valid prediction for GlimmerHMM_glimmerT_45033-T1 Couldn't classify 63519, 63546 Sorry, prediction pasa_asmbl_22465.p1 fails validation. (ATG) CC 54876-54983 GT AGG (CAA) AG 57933-57950 GT AGG (GCA) AG 59951-60061 GT ACG (CTC) AG 61849-61935 GT AGG (GAT) AG 62153-62209 GT TTG (ACG) AG 62304-62446 GT AGG (TGA) AG 62599-62689 GT AGG (TCT) AG 62791-62928 GT CGG (ATG) AG 63032-63080 GT GTG (TTG) AG 63243-63399 GT GGG (CTA) AG 63519-63546 GA GAG -recovered pasa_asmbl_22465.p1, initial, 54876, 54983 -recovered pasa_asmbl_22465.p1, initial, 63032, 63080 add_exon() Sorry, pasa_asmbl_22465.p1 62304-62446-terminal-2 is invalid. -recovered pasa_asmbl_22465.p1, terminal, 62304, 62446 -recovered pasa_asmbl_22465.p1, internal, 57933, 57950 -recovered pasa_asmbl_22465.p1, internal, 59951, 60061 -recovered pasa_asmbl_22465.p1, internal, 61849, 61935 -recovered pasa_asmbl_22465.p1, internal, 62153, 62209 -recovered pasa_asmbl_22465.p1, internal, 62304, 62446 -recovered pasa_asmbl_22465.p1, internal, 62599, 62689 -recovered pasa_asmbl_22465.p1, internal, 62791, 62928 -recovered pasa_asmbl_22465.p1, internal, 63032, 63080 -recovered pasa_asmbl_22465.p1, internal, 63243, 63399 Valid prediction for snap_scaffold_19-snap.2362-T1 Couldn't classify 201094, 201288 Sorry, prediction pasa_asmbl_22444.p1 fails validation. (TGT) AG 201094-201288 GT AGG (GCG) AG 201415-201491 GT AGG (TCT) AG 201582-201771 GT AGG (GTG) AG 202160-202252 CA GAC -recovered pasa_asmbl_22444.p1, terminal, 202160, 202252 -recovered pasa_asmbl_22444.p1, internal, 201094, 201288 -recovered pasa_asmbl_22444.p1, internal, 201415, 201491 -recovered pasa_asmbl_22444.p1, internal, 201582, 201771 Valid prediction for GlimmerHMM_glimmerT_45032-T1 Valid prediction for pasa_asmbl_22449.p1 Valid prediction for snap_scaffold_19-snap.2347-T1 Valid prediction for HiQ_model.g29880.t1 Couldn't classify 166218, 166280 Sorry, prediction pasa_asmbl_22451.p1 fails validation. (CGA) TC 166218-166280 GT TGG (TTG) AG 166403-166453 GT TGG (GAG) AG 167899-167994 GT ACG (CAT) AG 168078-168207 GT AGG (AGA) AG 168346-168375 GT AAG (TCG) AG 168602-168732 GT AGG (GAG) AG 169259-169377 GT AGG (GAG) AG 169534-169646 GT AAG (TGT) AG 170371-170481 GT TGG (GAA) AG 170578-170675 GT AGG (GAG) AG 170813-170854 GA GAG -recovered pasa_asmbl_22451.p1, terminal, 170813, 170854 -recovered pasa_asmbl_22451.p1, internal, 166403, 166453 -recovered pasa_asmbl_22451.p1, internal, 167899, 167994 -recovered pasa_asmbl_22451.p1, internal, 168078, 168207 -recovered pasa_asmbl_22451.p1, internal, 168346, 168375 -recovered pasa_asmbl_22451.p1, internal, 168602, 168732 -recovered pasa_asmbl_22451.p1, internal, 169259, 169377 -recovered pasa_asmbl_22451.p1, internal, 169534, 169646 -recovered pasa_asmbl_22451.p1, internal, 170371, 170481 -recovered pasa_asmbl_22451.p1, internal, 170578, 170675 Valid prediction for snap_scaffold_19-snap.2352-T1 Valid prediction for Augustus_model.g29877.t1 Valid prediction for snap_scaffold_19-snap.2349-T1 Valid prediction for GlimmerHMM_glimmerT_45009-T1 Valid prediction for snap_scaffold_19-snap.2365-T1 Valid prediction for snap_scaffold_19-snap.2381-T1 Valid prediction for HiQ_model.g29864.t1 Valid prediction for GlimmerHMM_glimmerT_45003-T1 Valid prediction for GlimmerHMM_glimmerT_45035-T1 Valid prediction for snap_scaffold_19-snap.2360-T1 Valid prediction for GlimmerHMM_glimmerT_45015-T1 Valid prediction for GlimmerHMM_glimmerT_45004-T1 Valid prediction for HiQ_model.g29866.t1 Valid prediction for GlimmerHMM_glimmerT_45034-T1 Valid prediction for CodingQuarry_transcript_25821-T1 Valid prediction for CodingQuarry_transcript_25823-T1 Valid prediction for GlimmerHMM_glimmerT_45016-T1 Valid prediction for pasa_asmbl_22468.p1 Valid prediction for pasa_asmbl_22443.p1 Valid prediction for CodingQuarry_transcript_25825-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 21139, rend_intergenic: 11606 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 25457, rend_intergenic: 21391 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 33178, rend_intergenic: 26394 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 36982, rend_intergenic: 33851 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 51854, rend_intergenic: 40406 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 68976, rend_intergenic: 62396 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 72710, rend_intergenic: 69806 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 90765, rend_intergenic: 77343 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100693, rend_intergenic: 92694 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 104863, rend_intergenic: 102436 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110422, rend_intergenic: 107560 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 117422, rend_intergenic: 112882 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 120000, rend_intergenic: 117624 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 125166, rend_intergenic: 120693 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 149471, rend_intergenic: 130437 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157602, rend_intergenic: 151633 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 166815, rend_intergenic: 159789 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 182103, rend_intergenic: 176230 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 184392, rend_intergenic: 182220 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 189268, rend_intergenic: 184436 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 210806, rend_intergenic: 203568 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 211711, rend_intergenic: 210871 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214821, rend_intergenic: 212850 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 227259, rend_intergenic: 223368 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 228645 -exon list size: 903 building trellis 0.1 0.2 0.3 0.4 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.4 2.5 2.7 2.8 2.9 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.8 3.9 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.8 4.9 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.9 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.9 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.8 9.0 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.8 9.9 10.1 10.2 10.3 10.4 10.5 10.6 10.7 10.8 10.9 11.0 11.2 11.3 11.4 11.5 11.6 11.7 11.8 11.9 12.0 12.2 12.3 12.4 12.5 12.6 12.7 12.8 12.9 13.0 13.1 13.3 13.4 13.5 13.6 13.7 13.8 13.9 14.0 14.1 14.3 14.4 14.5 14.6 14.7 14.8 14.9 15.0 15.1 15.2 15.4 15.5 15.6 15.7 15.8 15.9 16.0 16.1 16.2 16.4 16.5 16.6 16.7 16.8 16.9 17.0 17.1 17.2 17.3 17.5 17.6 17.7 17.8 17.9 18.0 18.1 18.2 18.3 18.5 18.6 18.7 18.8 18.9 19.0 19.1 19.2 19.3 19.4 19.6 19.7 19.8 19.9 20.0 20.1 20.2 20.3 20.4 20.6 20.7 20.8 20.9 21.0 21.1 21.2 21.3 21.4 21.5 21.7 21.8 21.9 22.0 22.1 22.2 22.3 22.4 22.5 22.7 22.8 22.9 23.0 23.1 23.2 23.3 23.4 23.5 23.6 23.8 23.9 24.0 24.1 24.2 24.3 24.4 24.5 24.6 24.8 24.9 25.0 25.1 25.2 25.3 25.4 25.5 25.6 25.7 25.9 26.0 26.1 26.2 26.3 26.4 26.5 26.6 26.7 26.9 27.0 27.1 27.2 27.3 27.4 27.5 27.6 27.7 27.8 28.0 28.1 28.2 28.3 28.4 28.5 28.6 28.7 28.8 29.0 29.1 29.2 29.3 29.4 29.5 29.6 29.7 29.8 29.9 30.1 30.2 30.3 30.4 30.5 30.6 30.7 30.8 30.9 31.0 31.2 31.3 31.4 31.5 31.6 31.7 31.8 31.9 32.0 32.2 32.3 32.4 32.5 32.6 32.7 32.8 32.9 33.0 33.1 33.3 33.4 33.5 33.6 33.7 33.8 33.9 34.0 34.1 34.3 34.4 34.5 34.6 34.7 34.8 34.9 35.0 35.1 35.2 35.4 35.5 35.6 35.7 35.8 35.9 36.0 36.1 36.2 36.4 36.5 36.6 36.7 36.8 36.9 37.0 37.1 37.2 37.3 37.5 37.6 37.7 37.8 37.9 38.0 38.1 38.2 38.3 38.5 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.3 39.4 39.6 39.7 39.8 39.9 40.0 40.1 40.2 40.3 40.4 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.3 41.4 41.5 41.7 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.5 42.7 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.5 43.6 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.5 44.6 44.8 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.6 45.7 45.9 46.0 46.1 46.2 46.3 46.4 46.5 46.6 46.7 46.9 47.0 47.1 47.2 47.3 47.4 47.5 47.6 47.7 47.8 48.0 48.1 48.2 48.3 48.4 48.5 48.6 48.7 48.8 49.0 49.1 49.2 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.8 50.9 51.0 51.2 51.3 51.4 51.5 51.6 51.7 51.8 51.9 52.0 52.2 52.3 52.4 52.5 52.6 52.7 52.8 52.9 53.0 53.1 53.3 53.4 53.5 53.6 53.7 53.8 53.9 54.0 54.1 54.3 54.4 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.2 55.4 55.5 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.4 56.5 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.3 57.5 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.3 58.5 58.6 58.7 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.6 59.7 59.8 59.9 60.0 60.1 60.2 60.3 60.4 60.6 60.7 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.5 61.7 61.8 61.9 62.0 62.1 62.2 62.3 62.4 62.5 62.7 62.8 62.9 63.0 63.1 63.2 63.3 63.4 63.5 63.6 63.8 63.9 64.0 64.1 64.2 64.3 64.4 64.5 64.6 64.8 64.9 65.0 65.1 65.2 65.3 65.4 65.5 65.6 65.7 65.9 66.0 66.1 66.2 66.3 66.4 66.5 66.6 66.7 66.9 67.0 67.1 67.2 67.3 67.4 67.5 67.6 67.7 67.8 68.0 68.1 68.2 68.3 68.4 68.5 68.6 68.7 68.8 69.0 69.1 69.2 69.3 69.4 69.5 69.6 69.7 69.8 69.9 70.1 70.2 70.3 70.4 70.5 70.6 70.7 70.8 70.9 71.0 71.2 71.3 71.4 71.5 71.6 71.7 71.8 71.9 72.0 72.2 72.3 72.4 72.5 72.6 72.7 72.8 72.9 73.0 73.1 73.3 73.4 73.5 73.6 73.7 73.8 73.9 74.0 74.1 74.3 74.4 74.5 74.6 74.7 74.8 74.9 75.0 75.1 75.2 75.4 75.5 75.6 75.7 75.8 75.9 76.0 76.1 76.2 76.4 76.5 76.6 76.7 76.8 76.9 77.0 77.1 77.2 77.3 77.5 77.6 77.7 77.8 77.9 78.0 78.1 78.2 78.3 78.5 78.6 78.7 78.8 78.9 79.0 79.1 79.2 79.3 79.4 79.6 79.7 79.8 79.9 80.0 80.1 80.2 80.3 80.4 80.6 80.7 80.8 80.9 81.0 81.1 81.2 81.3 81.4 81.5 81.7 81.8 81.9 82.0 82.1 82.2 82.3 82.4 82.5 82.7 82.8 82.9 83.0 83.1 83.2 83.3 83.4 83.5 83.6 83.8 83.9 84.0 84.1 84.2 84.3 84.4 84.5 84.6 84.8 84.9 85.0 85.1 85.2 85.3 85.4 85.5 85.6 85.7 85.9 86.0 86.1 86.2 86.3 86.4 86.5 86.6 86.7 86.9 87.0 87.1 87.2 87.3 87.4 87.5 87.6 87.7 87.8 88.0 88.1 88.2 88.3 88.4 88.5 88.6 88.7 88.8 89.0 89.1 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.9 90.1 90.2 90.3 90.4 90.5 90.6 90.7 90.8 90.9 91.0 91.2 91.3 91.4 91.5 91.6 91.7 91.8 91.9 92.0 92.2 92.3 92.4 92.5 92.6 92.7 92.8 92.9 93.0 93.1 93.3 93.4 93.5 93.6 93.7 93.8 93.9 94.0 94.1 94.3 94.4 94.5 94.6 94.7 94.8 94.9 95.0 95.1 95.2 95.4 95.5 95.6 95.7 95.8 95.9 96.0 96.1 96.2 96.4 96.5 96.6 96.7 96.8 96.9 97.0 97.1 97.2 97.3 97.5 97.6 97.7 97.8 97.9 98.0 98.1 98.2 98.3 98.5 98.6 98.7 98.8 98.9 99.0 99.1 99.2 99.3 99.4 99.6 99.7 99.8 99.9 -found 41 predictions from path traversal Error with prediction: snap lend_intergenic: 21139, rend_intergenic: 11606 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 25457, rend_intergenic: 21391 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 33178, rend_intergenic: 26394 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 36982, rend_intergenic: 33851 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 51854, rend_intergenic: 40406 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 68976, rend_intergenic: 62396 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 72710, rend_intergenic: 69806 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 90765, rend_intergenic: 77343 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100693, rend_intergenic: 92694 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 104863, rend_intergenic: 102436 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110422, rend_intergenic: 107560 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 117422, rend_intergenic: 112882 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 120000, rend_intergenic: 117624 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 125166, rend_intergenic: 120693 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 149471, rend_intergenic: 130437 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157602, rend_intergenic: 151633 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 166815, rend_intergenic: 159789 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 182103, rend_intergenic: 176230 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 184392, rend_intergenic: 182220 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 189268, rend_intergenic: 184436 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 210806, rend_intergenic: 203568 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 211711, rend_intergenic: 210871 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214821, rend_intergenic: 212850 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 227259, rend_intergenic: 223368 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 37 predictions persist after filtering for low support