-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_19/scaffold_19_11107821-11343054

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_44872-T1
Valid prediction for snap_scaffold_19-snap.2146-T1
Valid prediction for GlimmerHMM_glimmerT_44873-T1
Valid prediction for GlimmerHMM_glimmerT_44853-T1
Valid prediction for snap_scaffold_19-snap.2177-T1
Valid prediction for snap_scaffold_19-snap.2155-T1
Sorry, intron length (7) is less than minimum required (10)
Couldn't classify 155969, 155998
Couldn't classify 158801, 158851
Sorry, prediction pasa_asmbl_21685.p1 fails validation.
(CTG)	 TG	155969-155998	GT	AGG
(TGT)	 AG	157669-157753	GT	CCG
(AAT)	 AG	158083-158219	GT	AGG
(GAG)	 AG	158400-158513	GT	AGG
(CAG)	 AG	158600-158713	GT	AGG
(GAC)	 AG	158801-158851	GA	GCG
-recovered pasa_asmbl_21685.p1, internal, 157669, 157753
-recovered pasa_asmbl_21685.p1, internal, 158083, 158219
-recovered pasa_asmbl_21685.p1, internal, 158400, 158513
-recovered pasa_asmbl_21685.p1, internal, 158600, 158713
Valid prediction for pasa_asmbl_21674.p1
Valid prediction for GlimmerHMM_glimmerT_44862-T1
Valid prediction for snap_scaffold_19-snap.2143-T1
Valid prediction for GlimmerHMM_glimmerT_44871-T1
Valid prediction for HiQ_model.g29745.t1
Valid prediction for CodingQuarry_transcript_25795-T1
Couldn't classify 138092, 138961
Sorry, prediction pasa_asmbl_21678.p1 fails validation.
(CAG)	 TA	138092-138961	GG	AGG
Valid prediction for GlimmerHMM_glimmerT_44883-T1
Valid prediction for snap_scaffold_19-snap.2162-T1
Valid prediction for snap_scaffold_19-snap.2152-T1
Valid prediction for snap_scaffold_19-snap.2184-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for Augustus_model.g29758.t1
Valid prediction for snap_scaffold_19-snap.2179-T1
Valid prediction for Augustus_model.g29754.t1
Valid prediction for snap_scaffold_19-snap.2175-T1
Valid prediction for snap_scaffold_19-snap.2154-T1
Valid prediction for snap_scaffold_19-snap.2158-T1
Valid prediction for GlimmerHMM_glimmerT_44861-T1
Valid prediction for GlimmerHMM_glimmerT_44887-T1
Valid prediction for snap_scaffold_19-snap.2150-T1
Valid prediction for Augustus_model.g29757.t1
Valid prediction for GlimmerHMM_glimmerT_44885-T1
Valid prediction for GlimmerHMM_glimmerT_44878-T1
Valid prediction for snap_scaffold_19-snap.2149-T1
Valid prediction for snap_scaffold_19-snap.2151-T1
Valid prediction for Augustus_model.g29752.t1
Valid prediction for GlimmerHMM_glimmerT_44867-T1
Valid prediction for GlimmerHMM_glimmerT_44882-T1
Couldn't classify 49038, 49124
Sorry, prediction pasa_asmbl_21916.p1 fails validation.
(ATG)	 CC	47760-48272	GT	AGG
(GTG)	 AG	49038-49124	CC	AGC
-recovered pasa_asmbl_21916.p1, initial, 47760, 48272
Valid prediction for pasa_asmbl_21673.p1
Valid prediction for snap_scaffold_19-snap.2138-T1
Valid prediction for snap_scaffold_19-snap.2171-T1
Valid prediction for GlimmerHMM_glimmerT_44858-T1
Valid prediction for Augustus_model.g29756.t1
Valid prediction for CodingQuarry_transcript_25793-T1
Couldn't classify 189239, 189313
Couldn't classify 189712, 189821
Sorry, prediction pasa_asmbl_21688.p1 fails validation.
(GTT)	 GG	189239-189313	GT	AGG
(TGC)	 AG	189449-189599	GT	CAG
(CTC)	 AG	189712-189821	CT	ACC
-recovered pasa_asmbl_21688.p1, internal, 189449, 189599
Valid prediction for Augustus_model.g29749.t1
Valid prediction for Augustus_model.g29763.t1
Valid prediction for Augustus_model.g29751.t1
Valid prediction for HiQ_model.g29759.t1
Valid prediction for HiQ_model.g29747.t1
Valid prediction for CodingQuarry_transcript_25794-T1
Valid prediction for snap_scaffold_19-snap.2178-T1
Valid prediction for GlimmerHMM_glimmerT_44864-T1
Valid prediction for snap_scaffold_19-snap.2148-T1
Valid prediction for Augustus_model.g29755.t1
Valid prediction for snap_scaffold_19-snap.2170-T1
Valid prediction for GlimmerHMM_glimmerT_44889-T1
Couldn't classify 139859, 140158
Sorry, prediction pasa_asmbl_21680.p1 fails validation.
(GAG)	 CA	139859-140158	TC	GAT
Valid prediction for CodingQuarry_transcript_25791-T1
Valid prediction for GlimmerHMM_glimmerT_44855-T1
Valid prediction for snap_scaffold_19-snap.2140-T1
Couldn't classify 160542, 160694
Sorry, prediction pasa_asmbl_21686.p1 fails validation.
(AAG)	 AG	160542-160694	GT	CGG
(GGG)	 AG	160850-161039	GT	AGG
(TGA)	 AG	161340-161478	GT	AGG
(AAC)	 AG	161667-162112	GT	CAG
(ACA)	 AG	162274-162395	GT	AGG
(TAC)	 AG	163991-164150	GT	AGG
(GTG)	 AG	164279-164361	CA	AGC
-recovered pasa_asmbl_21686.p1, terminal, 164279, 164361
-recovered pasa_asmbl_21686.p1, internal, 160542, 160694
-recovered pasa_asmbl_21686.p1, internal, 160850, 161039
-recovered pasa_asmbl_21686.p1, internal, 161340, 161478
-recovered pasa_asmbl_21686.p1, internal, 161667, 162112
-recovered pasa_asmbl_21686.p1, internal, 162274, 162395
-recovered pasa_asmbl_21686.p1, internal, 163991, 164150
Valid prediction for snap_scaffold_19-snap.2166-T1
Couldn't classify 59417, 59500
Sorry, prediction pasa_asmbl_21670.p1 fails validation.
(GAA)	 AC	59417-59500	GT	AGG
(GTT)	 AG	59646-59682	GT	AGG
(ACC)	 AG	59776-59876	GT	AAG
(GTC)	 AG	60030-60111	GT	GGG
(GTA)	 AG	60198-60256	GT	TGG
(GTT)	 AG	60402-60447	GT	AGG
(ATG)	 AG	60587-60641	GT	AGG
(CCT)	 AG	60843-60969	GT	TTG
(GAA)	 AG	61116-61281	GT	GGG
(GCA)	 AG	61415-61452	GT	TTG
(AAC)	 AG	61573-61719	GT	AGG
(GTC)	 AG	61827-61943	CG	AGC
-recovered pasa_asmbl_21670.p1, initial, 60587, 60641
-recovered pasa_asmbl_21670.p1, terminal, 61827, 61943
-recovered pasa_asmbl_21670.p1, internal, 59646, 59682
-recovered pasa_asmbl_21670.p1, internal, 59776, 59876
-recovered pasa_asmbl_21670.p1, internal, 60030, 60111
-recovered pasa_asmbl_21670.p1, internal, 60198, 60256
-recovered pasa_asmbl_21670.p1, internal, 60402, 60447
-recovered pasa_asmbl_21670.p1, internal, 60587, 60641
-recovered pasa_asmbl_21670.p1, internal, 60843, 60969
-recovered pasa_asmbl_21670.p1, internal, 61116, 61281
-recovered pasa_asmbl_21670.p1, internal, 61415, 61452
-recovered pasa_asmbl_21670.p1, internal, 61573, 61719
Couldn't classify 133965, 134077
Sorry, prediction pasa_asmbl_21677.p1 fails validation.
(ATG)	 CT	132018-132048	GT	TGG
(ATT)	 AG	132267-132392	GT	AGG
(AAA)	 AG	132601-132693	GT	AGG
(CTT)	 AG	133769-133831	GT	ATG
(CTC)	 AG	133965-134077	AT	CAA
-recovered pasa_asmbl_21677.p1, initial, 132018, 132048
-recovered pasa_asmbl_21677.p1, internal, 132267, 132392
-recovered pasa_asmbl_21677.p1, internal, 132601, 132693
-recovered pasa_asmbl_21677.p1, internal, 133769, 133831
Valid prediction for Augustus_model.g29767.t1
Couldn't classify 49724, 49817
Sorry, prediction pasa_asmbl_21668.p1 fails validation.
(ATC)	 AC	49724-49817	GT	AGG
(TGA)	 AG	49979-50071	GT	GGG
(GCG)	 AG	50196-50388	GT	AGG
(CTA)	 AG	50474-50595	GT	TAG
(CGT)	 AG	50684-50793	GT	CGG
(GTG)	 AG	50899-51090	GT	AGG
(GTT)	 AG	51233-51309	GT	AGG
(AAT)	 AG	51391-51454	GT	AGG
(GTG)	 AG	51582-51667	GT	GGG
(GAA)	 AG	51771-51828	GT	TGG
(GTT)	 AG	51958-52062	GT	AGG
(GTT)	 AG	52351-52525	GT	GGG
(GCT)	 AG	52599-52711	GT	AGG
(GCC)	 AG	52817-52911	GT	AGG
(GCT)	 AG	53007-53075	GT	AGG
(GCA)	 AG	53173-53332	GT	AAG
-recovered pasa_asmbl_21668.p1, terminal, 53173, 53332
-recovered pasa_asmbl_21668.p1, internal, 49979, 50071
-recovered pasa_asmbl_21668.p1, internal, 50196, 50388
-recovered pasa_asmbl_21668.p1, internal, 50474, 50595
-recovered pasa_asmbl_21668.p1, internal, 50684, 50793
-recovered pasa_asmbl_21668.p1, internal, 50899, 51090
-recovered pasa_asmbl_21668.p1, internal, 51233, 51309
-recovered pasa_asmbl_21668.p1, internal, 51391, 51454
-recovered pasa_asmbl_21668.p1, internal, 51582, 51667
-recovered pasa_asmbl_21668.p1, internal, 51771, 51828
-recovered pasa_asmbl_21668.p1, internal, 51958, 52062
-recovered pasa_asmbl_21668.p1, internal, 52351, 52525
-recovered pasa_asmbl_21668.p1, internal, 52599, 52711
-recovered pasa_asmbl_21668.p1, internal, 52817, 52911
-recovered pasa_asmbl_21668.p1, internal, 53007, 53075
-recovered pasa_asmbl_21668.p1, internal, 53173, 53332
Valid prediction for Augustus_model.g29740.t1
Valid prediction for GlimmerHMM_glimmerT_44860-T1
Valid prediction for pasa_asmbl_21681.p2
Valid prediction for snap_scaffold_19-snap.2168-T1
Valid prediction for GlimmerHMM_glimmerT_44863-T1
Couldn't classify 139001, 139303
Sorry, prediction pasa_asmbl_21679.p2 fails validation.
(GGG)	 GG	139001-139303	GA	ATG
Valid prediction for Augustus_model.g29742.t1
Valid prediction for GlimmerHMM_glimmerT_44865-T1
Valid prediction for pasa_asmbl_21669.p1
Valid prediction for GlimmerHMM_glimmerT_44895-T1
Valid prediction for snap_scaffold_19-snap.2147-T1
Valid prediction for Augustus_model.g29760.t1
Valid prediction for snap_scaffold_19-snap.2159-T1
Valid prediction for Augustus_model.g29736.t1
Valid prediction for GlimmerHMM_glimmerT_44879-T1
Couldn't classify 191126, 191149
Sorry, prediction pasa_asmbl_21690.p1 fails validation.
(GAC)	 AA	191126-191149	GT	AGG
(GTC)	 AG	191237-191409	GT	AGG
(GAC)	 AG	191540-191645	GT	TGG
(GTT)	 AG	191776-191910	GT	AGG
(GCT)	 AG	192053-192145	CA	AAC
-recovered pasa_asmbl_21690.p1, terminal, 192053, 192145
-recovered pasa_asmbl_21690.p1, internal, 191237, 191409
-recovered pasa_asmbl_21690.p1, internal, 191540, 191645
-recovered pasa_asmbl_21690.p1, internal, 191776, 191910
Valid prediction for GlimmerHMM_glimmerT_44894-T1
Valid prediction for HiQ_model.g29743.t1
Valid prediction for snap_scaffold_19-snap.2185-T1
Valid prediction for GlimmerHMM_glimmerT_44856-T1
Valid prediction for GlimmerHMM_glimmerT_44868-T1
Valid prediction for HiQ_model.g29744.t1
Couldn't classify 134863, 134968
Couldn't classify 136368, 136472
Sorry, prediction pasa_asmbl_21898.p1 fails validation.
(GGA)	 AC	134863-134968	GT	AGG
(ACA)	 AG	135454-135578	GT	CGG
(GTG)	 AG	135854-136039	GT	GGG
(GAG)	 AG	136368-136472	GT	AGG
-recovered pasa_asmbl_21898.p1, internal, 135454, 135578
-recovered pasa_asmbl_21898.p1, internal, 135854, 136039
-recovered pasa_asmbl_21898.p1, internal, 136368, 136472
Valid prediction for GlimmerHMM_glimmerT_44866-T1
Valid prediction for snap_scaffold_19-snap.2187-T1
Valid prediction for CodingQuarry_transcript_25792-T1
Couldn't classify 189953, 190064
Couldn't classify 191060, 191092
Sorry, prediction pasa_asmbl_21689.p1 fails validation.
(GAG)	 CA	189953-190064	GT	CCG
(AGC)	 AG	190170-190270	GT	TGG
(ATG)	 AG	190469-190660	GT	AGG
(GTT)	 AG	190746-190901	GT	AGG
(GAC)	 AG	191060-191092	AA	AGA
-recovered pasa_asmbl_21689.p1, initial, 190469, 190660
-recovered pasa_asmbl_21689.p1, internal, 190170, 190270
-recovered pasa_asmbl_21689.p1, internal, 190469, 190660
-recovered pasa_asmbl_21689.p1, internal, 190746, 190901
Valid prediction for snap_scaffold_19-snap.2176-T1
Valid prediction for GlimmerHMM_glimmerT_44875-T1
Valid prediction for snap_scaffold_19-snap.2164-T1
Valid prediction for GlimmerHMM_glimmerT_44881-T1
Valid prediction for GlimmerHMM_glimmerT_44870-T1
Valid prediction for snap_scaffold_19-snap.2169-T1
Valid prediction for GlimmerHMM_glimmerT_44876-T1
Valid prediction for Augustus_model.g29738.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g29768.t1
Valid prediction for GlimmerHMM_glimmerT_44854-T1
Valid prediction for snap_scaffold_19-snap.2173-T1
Valid prediction for Augustus_model.g29739.t1
Valid prediction for Augustus_model.g29748.t1
Valid prediction for Augustus_model.g29761.t1
Valid prediction for CodingQuarry_transcript_25797-T1
Valid prediction for GlimmerHMM_glimmerT_44869-T1
Valid prediction for GlimmerHMM_glimmerT_44880-T1
Valid prediction for Augustus_model.g29753.t1
Valid prediction for GlimmerHMM_glimmerT_44874-T1
Valid prediction for Augustus_model.g29746.t1
Valid prediction for Augustus_model.g29741.t1
Valid prediction for GlimmerHMM_glimmerT_44851-T1
Valid prediction for snap_scaffold_19-snap.2139-T1
Valid prediction for Augustus_model.g29766.t1
Valid prediction for snap_scaffold_19-snap.2172-T1
Valid prediction for GlimmerHMM_glimmerT_44890-T1
Valid prediction for GlimmerHMM_glimmerT_44884-T1
Valid prediction for snap_scaffold_19-snap.2174-T1
Valid prediction for snap_scaffold_19-snap.2181-T1
Valid prediction for Augustus_model.g29762.t1
Valid prediction for Augustus_model.g29737.t1
Valid prediction for GlimmerHMM_glimmerT_44888-T1
Valid prediction for GlimmerHMM_glimmerT_44886-T1
Valid prediction for Augustus_model.g29764.t1
Valid prediction for snap_scaffold_19-snap.2182-T1
Valid prediction for snap_scaffold_19-snap.2157-T1
Valid prediction for GlimmerHMM_glimmerT_44857-T1
Valid prediction for pasa_asmbl_22375.p1
Valid prediction for Augustus_model.g29750.t1
Valid prediction for HiQ_model.g29765.t1
Valid prediction for GlimmerHMM_glimmerT_44892-T1
Valid prediction for snap_scaffold_19-snap.2183-T1
Valid prediction for GlimmerHMM_glimmerT_44893-T1
Valid prediction for GlimmerHMM_glimmerT_44891-T1
Valid prediction for snap_scaffold_19-snap.2156-T1
Valid prediction for snap_scaffold_19-snap.2136-T1
Valid prediction for snap_scaffold_19-snap.2160-T1
Valid prediction for Augustus_model.g29735.t1
Valid prediction for snap_scaffold_19-snap.2141-T1
Couldn't classify 115447, 115748
Sorry, prediction pasa_asmbl_22373.p1 fails validation.
(GCC)	 GA	115447-115748	GT	AGG
(GTT)	 AG	115983-116548	GT	AGG
(GTG)	 AG	116694-116980	CG	AAC
add_exon() Sorry, pasa_asmbl_22373.p1 115983-116548-terminal-2 is invalid.
-recovered pasa_asmbl_22373.p1, terminal, 115983, 116548
-recovered pasa_asmbl_22373.p1, terminal, 116694, 116980
-recovered pasa_asmbl_22373.p1, internal, 115983, 116548
Valid prediction for Augustus_model.g29769.t1
Valid prediction for snap_scaffold_19-snap.2153-T1
Valid prediction for CodingQuarry_transcript_25796-T1
Valid prediction for snap_scaffold_19-snap.2144-T1
Couldn't classify 20410, 20477
Sorry, prediction pasa_asmbl_22378.p1 fails validation.
(CCA)	 GT	20410-20477	GT	AAG
(GTC)	 AG	20616-20675	GT	AGG
(GAC)	 AG	20851-20950	GT	AGG
(GAC)	 AG	21139-21197	GT	AAG
(ATA)	 AG	21773-21940	GT	AGG
(GGA)	 AG	22050-22106	GT	AGG
(AGG)	 AG	22295-22451	TG	AGT
add_exon() Sorry, pasa_asmbl_22378.p1 21773-21940-terminal-1 is invalid.
-recovered pasa_asmbl_22378.p1, terminal, 21773, 21940
add_exon() Sorry, pasa_asmbl_22378.p1 22050-22106-terminal-1 is invalid.
-recovered pasa_asmbl_22378.p1, terminal, 22050, 22106
-recovered pasa_asmbl_22378.p1, terminal, 22295, 22451
-recovered pasa_asmbl_22378.p1, internal, 20616, 20675
-recovered pasa_asmbl_22378.p1, internal, 20851, 20950
-recovered pasa_asmbl_22378.p1, internal, 21139, 21197
-recovered pasa_asmbl_22378.p1, internal, 21773, 21940
-recovered pasa_asmbl_22378.p1, internal, 22050, 22106
Valid prediction for GlimmerHMM_glimmerT_44852-T1
Valid prediction for GlimmerHMM_glimmerT_44859-T1
Valid prediction for snap_scaffold_19-snap.2167-T1
Valid prediction for snap_scaffold_19-snap.2180-T1
Valid prediction for snap_scaffold_19-snap.2137-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_19-snap.2161-T1
Couldn't classify 6519, 6648
Sorry, prediction pasa_asmbl_22380.p2 fails validation.
(CAG)	 TC	6519-6648	GT	TGG
(GCC)	 AG	8260-8407	GT	CGG
(GCT)	 AG	8584-8818	GT	AGG
(GCC)	 AG	9075-9335	AA	AAA
-recovered pasa_asmbl_22380.p2, terminal, 9075, 9335
-recovered pasa_asmbl_22380.p2, internal, 8260, 8407
-recovered pasa_asmbl_22380.p2, internal, 8584, 8818
Valid prediction for snap_scaffold_19-snap.2163-T1
Valid prediction for snap_scaffold_19-snap.2142-T1
Valid prediction for GlimmerHMM_glimmerT_44877-T1
Valid prediction for snap_scaffold_19-snap.2145-T1
Valid prediction for snap_scaffold_19-snap.2165-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 25127, rend_intergenic: 18775  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29556, rend_intergenic: 26430  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42171, rend_intergenic: 37189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45751, rend_intergenic: 42888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95189, rend_intergenic: 90539  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105383, rend_intergenic: 97326  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109291, rend_intergenic: 107607  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140158, rend_intergenic: 136262  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 235234
-exon list size: 625


building trellis

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22.8    
23.0    
23.1    
23.3    
23.4    
23.6    
23.8    
23.9    
24.1    
24.2    
24.4    
24.6    
24.7    
24.9    
25.0    
25.2    
25.4    
25.5    
25.7    
25.8    
26.0    
26.2    
26.3    
26.5    
26.6    
26.8    
27.0    
27.1    
27.3    
27.4    
27.6    
27.8    
27.9    
28.1    
28.2    
28.4    
28.5    
28.7    
28.9    
29.0    
29.2    
29.3    
29.5    
29.7    
29.8    
30.0    
30.1    
30.3    
30.5    
30.6    
30.8    
30.9    
31.1    
31.3    
31.4    
31.6    
31.7    
31.9    
32.1    
32.2    
32.4    
32.5    
32.7    
32.9    
33.0    
33.2    
33.3    
33.5    
33.7    
33.8    
34.0    
34.1    
34.3    
34.4    
34.6    
34.8    
34.9    
35.1    
35.2    
35.4    
35.6    
35.7    
35.9    
36.0    
36.2    
36.4    
36.5    
36.7    
36.8    
37.0    
37.2    
37.3    
37.5    
37.6    
37.8    
38.0    
38.1    
38.3    
38.4    
38.6    
38.8    
38.9    
39.1    
39.2    
39.4    
39.6    
39.7    
39.9    
40.0    
40.2    
40.4    
40.5    
40.7    
40.8    
41.0    
41.1    
41.3    
41.5    
41.6    
41.8    
41.9    
42.1    
42.3    
42.4    
42.6    
42.7    
42.9    
43.1    
43.2    
43.4    
43.5    
43.7    
43.9    
44.0    
44.2    
44.3    
44.5    
44.7    
44.8    
45.0    
45.1    
45.3    
45.5    
45.6    
45.8    
45.9    
46.1    
46.3    
46.4    
46.6    
46.7    
46.9    
47.0    
47.2    
47.4    
47.5    
47.7    
47.8    
48.0    
48.2    
48.3    
48.5    
48.6    
48.8    
49.0    
49.1    
49.3    
49.4    
49.6    
49.8    
49.9    
50.1    
50.2    
50.4    
50.6    
50.7    
50.9    
51.0    
51.2    
51.4    
51.5    
51.7    
51.8    
52.0    
52.2    
52.3    
52.5    
52.6    
52.8    
53.0    
53.1    
53.3    
53.4    
53.6    
53.7    
53.9    
54.1    
54.2    
54.4    
54.5    
54.7    
54.9    
55.0    
55.2    
55.3    
55.5    
55.7    
55.8    
56.0    
56.1    
56.3    
56.5    
56.6    
56.8    
56.9    
57.1    
57.3    
57.4    
57.6    
57.7    
57.9    
58.1    
58.2    
58.4    
58.5    
58.7    
58.9    
59.0    
59.2    
59.3    
59.5    
59.6    
59.8    
60.0    
60.1    
60.3    
60.4    
60.6    
60.8    
60.9    
61.1    
61.2    
61.4    
61.6    
61.7    
61.9    
62.0    
62.2    
62.4    
62.5    
62.7    
62.8    
63.0    
63.2    
63.3    
63.5    
63.6    
63.8    
64.0    
64.1    
64.3    
64.4    
64.6    
64.8    
64.9    
65.1    
65.2    
65.4    
65.6    
65.7    
65.9    
66.0    
66.2    
66.3    
66.5    
66.7    
66.8    
67.0    
67.1    
67.3    
67.5    
67.6    
67.8    
67.9    
68.1    
68.3    
68.4    
68.6    
68.7    
68.9    
69.1    
69.2    
69.4    
69.5    
69.7    
69.9    
70.0    
70.2    
70.3    
70.5    
70.7    
70.8    
71.0    
71.1    
71.3    
71.5    
71.6    
71.8    
71.9    
72.1    
72.2    
72.4    
72.6    
72.7    
72.9    
73.0    
73.2    
73.4    
73.5    
73.7    
73.8    
74.0    
74.2    
74.3    
74.5    
74.6    
74.8    
75.0    
75.1    
75.3    
75.4    
75.6    
75.8    
75.9    
76.1    
76.2    
76.4    
76.6    
76.7    
76.9    
77.0    
77.2    
77.4    
77.5    
77.7    
77.8    
78.0    
78.1    
78.3    
78.5    
78.6    
78.8    
78.9    
79.1    
79.3    
79.4    
79.6    
79.7    
79.9    
80.1    
80.2    
80.4    
80.5    
80.7    
80.9    
81.0    
81.2    
81.3    
81.5    
81.7    
81.8    
82.0    
82.1    
82.3    
82.5    
82.6    
82.8    
82.9    
83.1    
83.3    
83.4    
83.6    
83.7    
83.9    
84.1    
84.2    
84.4    
84.5    
84.7    
84.8    
85.0    
85.2    
85.3    
85.5    
85.6    
85.8    
86.0    
86.1    
86.3    
86.4    
86.6    
86.8    
86.9    
87.1    
87.2    
87.4    
87.6    
87.7    
87.9    
88.0    
88.2    
88.4    
88.5    
88.7    
88.8    
89.0    
89.2    
89.3    
89.5    
89.6    
89.8    
90.0    
90.1    
90.3    
90.4    
90.6    
90.7    
90.9    
91.1    
91.2    
91.4    
91.5    
91.7    
91.9    
92.0    
92.2    
92.3    
92.5    
92.7    
92.8    
93.0    
93.1    
93.3    
93.5    
93.6    
93.8    
93.9    
94.1    
94.3    
94.4    
94.6    
94.7    
94.9    
95.1    
95.2    
95.4    
95.5    
95.7    
95.9    
96.0    
96.2    
96.3    
96.5    
96.7    
96.8    
97.0    
97.1    
97.3    
97.4    
97.6    
97.8    
97.9    
98.1    
98.2    
98.4    
98.6    
98.7    
98.9    
99.0    
99.2    
99.4    
99.5    
99.7    
99.8    
-found 50 predictions from path traversal
Error with prediction: snap lend_intergenic: 25127, rend_intergenic: 18775  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29556, rend_intergenic: 26430  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42171, rend_intergenic: 37189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45751, rend_intergenic: 42888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95189, rend_intergenic: 90539  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105383, rend_intergenic: 97326  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109291, rend_intergenic: 107607  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140158, rend_intergenic: 136262  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 43 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 13479
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support