-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_19/scaffold_19_10926236-11111454

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g29721.t1
Valid prediction for GlimmerHMM_glimmerT_44841-T1
Couldn't classify 124029, 124140
Couldn't classify 125501, 125625
Sorry, prediction pasa_asmbl_21938.p1 fails validation.
(ATC)	 AC	124029-124140	GT	AGG
(TGG)	 AG	125180-125335	GT	CAG
(AGT)	 AG	125501-125625	AA	ACA
-recovered pasa_asmbl_21938.p1, internal, 125180, 125335
Valid prediction for snap_scaffold_19-snap.2107-T1
Valid prediction for GlimmerHMM_glimmerT_44837-T1
Valid prediction for GlimmerHMM_glimmerT_44839-T1
Valid prediction for Augustus_model.g29729.t1
Valid prediction for Augustus_model.g29726.t1
Valid prediction for GlimmerHMM_glimmerT_44850-T1
Valid prediction for Augustus_model.g29732.t1
Valid prediction for snap_scaffold_19-snap.2120-T1
Valid prediction for snap_scaffold_19-snap.2111-T1
Valid prediction for Augustus_model.g29727.t1
Valid prediction for GlimmerHMM_glimmerT_44845-T1
Valid prediction for GlimmerHMM_glimmerT_44833-T1
Valid prediction for snap_scaffold_19-snap.2131-T1
Valid prediction for snap_scaffold_19-snap.2109-T1
Valid prediction for GlimmerHMM_glimmerT_44842-T1
Valid prediction for Augustus_model.g29724.t1
Valid prediction for Augustus_model.g29734.t1
Valid prediction for Augustus_model.g29730.t1
Valid prediction for Augustus_model.g29731.t1
Valid prediction for GlimmerHMM_glimmerT_44826-T1
Valid prediction for snap_scaffold_19-snap.2132-T1
Valid prediction for snap_scaffold_19-snap.2117-T1
Valid prediction for snap_scaffold_19-snap.2115-T1
Valid prediction for GlimmerHMM_glimmerT_44827-T1
Valid prediction for Augustus_model.g29722.t1
Valid prediction for snap_scaffold_19-snap.2097-T1
Valid prediction for GlimmerHMM_glimmerT_44825-T1
Valid prediction for GlimmerHMM_glimmerT_44846-T1
Valid prediction for Augustus_model.g29720.t1
Valid prediction for snap_scaffold_19-snap.2095-T1
Valid prediction for GlimmerHMM_glimmerT_44829-T1
Valid prediction for snap_scaffold_19-snap.2105-T1
Valid prediction for snap_scaffold_19-snap.2103-T1
Valid prediction for GlimmerHMM_glimmerT_44834-T1
Valid prediction for snap_scaffold_19-snap.2130-T1
Valid prediction for snap_scaffold_19-snap.2125-T1
Valid prediction for GlimmerHMM_glimmerT_44823-T1
Valid prediction for GlimmerHMM_glimmerT_44844-T1
Valid prediction for Augustus_model.g29723.t1
Valid prediction for snap_scaffold_19-snap.2119-T1
Valid prediction for snap_scaffold_19-snap.2110-T1
Valid prediction for Augustus_model.g29725.t1
Valid prediction for snap_scaffold_19-snap.2112-T1
Valid prediction for GlimmerHMM_glimmerT_44840-T1
Valid prediction for GlimmerHMM_glimmerT_44836-T1
Valid prediction for GlimmerHMM_glimmerT_44830-T1
Valid prediction for Augustus_model.g29728.t1
Valid prediction for snap_scaffold_19-snap.2135-T1
Valid prediction for snap_scaffold_19-snap.2116-T1
Valid prediction for GlimmerHMM_glimmerT_44848-T1
Valid prediction for snap_scaffold_19-snap.2121-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 9485, 9827
Couldn't classify 10759, 10813
Sorry, prediction pasa_asmbl_22370.p1 fails validation.
(ACA)	 AC	9485-9827	GT	TGG
(AGC)	 AG	9937-10242	GT	AAG
(ACC)	 AG	10483-10558	GT	AGG
(AAA)	 AG	10759-10813	TC	TGT
-recovered pasa_asmbl_22370.p1, internal, 9937, 10242
-recovered pasa_asmbl_22370.p1, internal, 10483, 10558
Valid prediction for snap_scaffold_19-snap.2104-T1
Couldn't classify 15726, 15762
Couldn't classify 16031, 16347
Sorry, prediction pasa_asmbl_22672.p1 fails validation.
(CAC)	 CA	15726-15762	GT	AGG
(GGT)	 AG	16031-16347	AA	AGA
Valid prediction for snap_scaffold_19-snap.2123-T1
Valid prediction for snap_scaffold_19-snap.2099-T1
Valid prediction for snap_scaffold_19-snap.2106-T1
Valid prediction for snap_scaffold_19-snap.2124-T1
Valid prediction for GlimmerHMM_glimmerT_44835-T1
Valid prediction for snap_scaffold_19-snap.2113-T1
Valid prediction for GlimmerHMM_glimmerT_44831-T1
Valid prediction for snap_scaffold_19-snap.2114-T1
Valid prediction for snap_scaffold_19-snap.2129-T1
Valid prediction for GlimmerHMM_glimmerT_44828-T1
Valid prediction for snap_scaffold_19-snap.2127-T1
Valid prediction for snap_scaffold_19-snap.2128-T1
Valid prediction for snap_scaffold_19-snap.2098-T1
Valid prediction for GlimmerHMM_glimmerT_44832-T1
Valid prediction for GlimmerHMM_glimmerT_44843-T1
Valid prediction for GlimmerHMM_glimmerT_44824-T1
Valid prediction for snap_scaffold_19-snap.2102-T1
Valid prediction for GlimmerHMM_glimmerT_44849-T1
Valid prediction for snap_scaffold_19-snap.2126-T1
Valid prediction for snap_scaffold_19-snap.2133-T1
Valid prediction for snap_scaffold_19-snap.2096-T1
Valid prediction for GlimmerHMM_glimmerT_44838-T1
Valid prediction for Augustus_model.g29733.t1
Valid prediction for snap_scaffold_19-snap.2108-T1
Valid prediction for snap_scaffold_19-snap.2118-T1
Valid prediction for snap_scaffold_19-snap.2100-T1
Valid prediction for snap_scaffold_19-snap.2101-T1
Valid prediction for GlimmerHMM_glimmerT_44847-T1
Valid prediction for snap_scaffold_19-snap.2134-T1
Valid prediction for snap_scaffold_19-snap.2122-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11526, rend_intergenic: 5160  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14583, rend_intergenic: 11631  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50340, rend_intergenic: 14840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50403, rend_intergenic: 50369  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53031, rend_intergenic: 52541  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57372, rend_intergenic: 53080  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75683, rend_intergenic: 58155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80301, rend_intergenic: 75745  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83424, rend_intergenic: 80734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95134, rend_intergenic: 91560  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103331, rend_intergenic: 95338  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110813, rend_intergenic: 109726  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117282, rend_intergenic: 111826  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139635, rend_intergenic: 118150  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156653, rend_intergenic: 151564  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160740, rend_intergenic: 158553  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 185219
-exon list size: 399


building trellis

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3.5    
3.7    
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7.2    
7.5    
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9.5    
9.7    
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10.2    
10.5    
10.7    
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11.2    
11.5    
11.7    
12.0    
12.2    
12.5    
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13.2    
13.5    
13.7    
14.0    
14.2    
14.5    
14.7    
15.0    
15.2    
15.5    
15.7    
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16.2    
16.5    
16.7    
17.0    
17.2    
17.5    
17.7    
18.0    
18.2    
18.5    
18.7    
19.0    
19.2    
19.5    
19.7    
20.0    
20.2    
20.4    
20.7    
20.9    
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21.4    
21.7    
21.9    
22.2    
22.4    
22.7    
22.9    
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23.4    
23.7    
23.9    
24.2    
24.4    
24.7    
24.9    
25.2    
25.4    
25.7    
25.9    
26.2    
26.4    
26.7    
26.9    
27.2    
27.4    
27.7    
27.9    
28.2    
28.4    
28.7    
28.9    
29.2    
29.4    
29.7    
29.9    
30.2    
30.4    
30.7    
30.9    
31.2    
31.4    
31.7    
31.9    
32.2    
32.4    
32.7    
32.9    
33.2    
33.4    
33.7    
33.9    
34.2    
34.4    
34.7    
34.9    
35.2    
35.4    
35.7    
35.9    
36.2    
36.4    
36.7    
36.9    
37.2    
37.4    
37.7    
37.9    
38.2    
38.4    
38.7    
38.9    
39.2    
39.4    
39.7    
39.9    
40.1    
40.4    
40.6    
40.9    
41.1    
41.4    
41.6    
41.9    
42.1    
42.4    
42.6    
42.9    
43.1    
43.4    
43.6    
43.9    
44.1    
44.4    
44.6    
44.9    
45.1    
45.4    
45.6    
45.9    
46.1    
46.4    
46.6    
46.9    
47.1    
47.4    
47.6    
47.9    
48.1    
48.4    
48.6    
48.9    
49.1    
49.4    
49.6    
49.9    
50.1    
50.4    
50.6    
50.9    
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51.4    
51.6    
51.9    
52.1    
52.4    
52.6    
52.9    
53.1    
53.4    
53.6    
53.9    
54.1    
54.4    
54.6    
54.9    
55.1    
55.4    
55.6    
55.9    
56.1    
56.4    
56.6    
56.9    
57.1    
57.4    
57.6    
57.9    
58.1    
58.4    
58.6    
58.9    
59.1    
59.4    
59.6    
59.9    
60.1    
60.3    
60.6    
60.8    
61.1    
61.3    
61.6    
61.8    
62.1    
62.3    
62.6    
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63.1    
63.3    
63.6    
63.8    
64.1    
64.3    
64.6    
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65.6    
65.8    
66.1    
66.3    
66.6    
66.8    
67.1    
67.3    
67.6    
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68.1    
68.3    
68.6    
68.8    
69.1    
69.3    
69.6    
69.8    
70.1    
70.3    
70.6    
70.8    
71.1    
71.3    
71.6    
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72.1    
72.3    
72.6    
72.8    
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73.3    
73.6    
73.8    
74.1    
74.3    
74.6    
74.8    
75.1    
75.3    
75.6    
75.8    
76.1    
76.3    
76.6    
76.8    
77.1    
77.3    
77.6    
77.8    
78.1    
78.3    
78.6    
78.8    
79.1    
79.3    
79.6    
79.8    
80.0    
80.3    
80.5    
80.8    
81.0    
81.3    
81.5    
81.8    
82.0    
82.3    
82.5    
82.8    
83.0    
83.3    
83.5    
83.8    
84.0    
84.3    
84.5    
84.8    
85.0    
85.3    
85.5    
85.8    
86.0    
86.3    
86.5    
86.8    
87.0    
87.3    
87.5    
87.8    
88.0    
88.3    
88.5    
88.8    
89.0    
89.3    
89.5    
89.8    
90.0    
90.3    
90.5    
90.8    
91.0    
91.3    
91.5    
91.8    
92.0    
92.3    
92.5    
92.8    
93.0    
93.3    
93.5    
93.8    
94.0    
94.3    
94.5    
94.8    
95.0    
95.3    
95.5    
95.8    
96.0    
96.3    
96.5    
96.8    
97.0    
97.3    
97.5    
97.8    
98.0    
98.3    
98.5    
98.8    
99.0    
99.3    
99.5    
99.8    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 11526, rend_intergenic: 5160  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14583, rend_intergenic: 11631  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50340, rend_intergenic: 14840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50403, rend_intergenic: 50369  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53031, rend_intergenic: 52541  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57372, rend_intergenic: 53080  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75683, rend_intergenic: 58155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80301, rend_intergenic: 75745  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83424, rend_intergenic: 80734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95134, rend_intergenic: 91560  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103331, rend_intergenic: 95338  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110813, rend_intergenic: 109726  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117282, rend_intergenic: 111826  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139635, rend_intergenic: 118150  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156653, rend_intergenic: 151564  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160740, rend_intergenic: 158553  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support