-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_19/scaffold_19_10466699-10624857

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_19-snap.2009-T1
Valid prediction for GlimmerHMM_glimmerT_44749-T1
Valid prediction for GlimmerHMM_glimmerT_44761-T1
Valid prediction for GlimmerHMM_glimmerT_44746-T1
Valid prediction for snap_scaffold_19-snap.2004-T1
Valid prediction for snap_scaffold_19-snap.2007-T1
Valid prediction for snap_scaffold_19-snap.2011-T1
Valid prediction for GlimmerHMM_glimmerT_44747-T1
Valid prediction for snap_scaffold_19-snap.2000-T1
Valid prediction for snap_scaffold_19-snap.1996-T1
Valid prediction for snap_scaffold_19-snap.1992-T1
Valid prediction for snap_scaffold_19-snap.1989-T1
Valid prediction for GlimmerHMM_glimmerT_44751-T1
Valid prediction for snap_scaffold_19-snap.2001-T1
Valid prediction for snap_scaffold_19-snap.1998-T1
Valid prediction for snap_scaffold_19-snap.2002-T1
Valid prediction for Augustus_model.g29677.t1
Valid prediction for snap_scaffold_19-snap.2016-T1
Valid prediction for snap_scaffold_19-snap.1993-T1
Valid prediction for snap_scaffold_19-snap.2010-T1
Valid prediction for Augustus_model.g29678.t1
Valid prediction for snap_scaffold_19-snap.1977-T1
Valid prediction for snap_scaffold_19-snap.2015-T1
Valid prediction for snap_scaffold_19-snap.2012-T1
Valid prediction for snap_scaffold_19-snap.1982-T1
Valid prediction for Augustus_model.g29680.t1
Valid prediction for Augustus_model.g29681.t1
Valid prediction for snap_scaffold_19-snap.1985-T1
Valid prediction for GlimmerHMM_glimmerT_44763-T1
Valid prediction for Augustus_model.g29671.t1
Valid prediction for snap_scaffold_19-snap.2006-T1
Valid prediction for GlimmerHMM_glimmerT_44759-T1
Valid prediction for Augustus_model.g29679.t1
Valid prediction for snap_scaffold_19-snap.1974-T1
Valid prediction for GlimmerHMM_glimmerT_44750-T1
Valid prediction for GlimmerHMM_glimmerT_44752-T1
Valid prediction for snap_scaffold_19-snap.1988-T1
Valid prediction for snap_scaffold_19-snap.1999-T1
Valid prediction for snap_scaffold_19-snap.2014-T1
Valid prediction for GlimmerHMM_glimmerT_44756-T1
Valid prediction for snap_scaffold_19-snap.1981-T1
Valid prediction for snap_scaffold_19-snap.1983-T1
Valid prediction for GlimmerHMM_glimmerT_44758-T1
Valid prediction for GlimmerHMM_glimmerT_44755-T1
Valid prediction for GlimmerHMM_glimmerT_44744-T1
Valid prediction for snap_scaffold_19-snap.1991-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_19-snap.1979-T1
Valid prediction for snap_scaffold_19-snap.2013-T1
Valid prediction for Augustus_model.g29674.t1
Valid prediction for snap_scaffold_19-snap.1973-T1
Valid prediction for GlimmerHMM_glimmerT_44753-T1
Valid prediction for GlimmerHMM_glimmerT_44745-T1
Valid prediction for snap_scaffold_19-snap.1975-T1
Valid prediction for GlimmerHMM_glimmerT_44762-T1
Valid prediction for GlimmerHMM_glimmerT_44743-T1
Valid prediction for GlimmerHMM_glimmerT_44757-T1
Valid prediction for snap_scaffold_19-snap.1987-T1
Valid prediction for GlimmerHMM_glimmerT_44748-T1
Valid prediction for Augustus_model.g29676.t1
Valid prediction for snap_scaffold_19-snap.1990-T1
Valid prediction for snap_scaffold_19-snap.1984-T1
Valid prediction for snap_scaffold_19-snap.2017-T1
Valid prediction for snap_scaffold_19-snap.1997-T1
Valid prediction for Augustus_model.g29682.t1
Valid prediction for snap_scaffold_19-snap.2005-T1
Valid prediction for snap_scaffold_19-snap.1995-T1
Valid prediction for GlimmerHMM_glimmerT_44760-T1
Valid prediction for Augustus_model.g29673.t1
Valid prediction for snap_scaffold_19-snap.2008-T1
Valid prediction for GlimmerHMM_glimmerT_44741-T1
Valid prediction for Augustus_model.g29675.t1
Valid prediction for snap_scaffold_19-snap.1976-T1
Valid prediction for GlimmerHMM_glimmerT_44764-T1
Valid prediction for GlimmerHMM_glimmerT_44742-T1
Valid prediction for snap_scaffold_19-snap.1986-T1
Valid prediction for snap_scaffold_19-snap.1994-T1
Valid prediction for GlimmerHMM_glimmerT_44754-T1
Valid prediction for snap_scaffold_19-snap.1978-T1
Valid prediction for snap_scaffold_19-snap.1980-T1
Valid prediction for snap_scaffold_19-snap.2003-T1
Valid prediction for Augustus_model.g29672.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6355, rend_intergenic: 2062  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13422, rend_intergenic: 11674  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20433, rend_intergenic: 13591  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28644, rend_intergenic: 25824  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39345, rend_intergenic: 35228  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43080, rend_intergenic: 41203  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49540, rend_intergenic: 45776  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52211, rend_intergenic: 51662  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56054, rend_intergenic: 53212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79676, rend_intergenic: 75656  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108863, rend_intergenic: 104578  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143187, rend_intergenic: 136457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 158159
-exon list size: 270


building trellis

0.4    
0.7    
1.1    
1.5    
1.8    
2.2    
2.6    
2.9    
3.3    
3.7    
4.0    
4.4    
4.8    
5.1    
5.5    
5.9    
6.2    
6.6    
7.0    
7.4    
7.7    
8.1    
8.5    
8.8    
9.2    
9.6    
9.9    
10.3    
10.7    
11.0    
11.4    
11.8    
12.1    
12.5    
12.9    
13.2    
13.6    
14.0    
14.3    
14.7    
15.1    
15.4    
15.8    
16.2    
16.5    
16.9    
17.3    
17.6    
18.0    
18.4    
18.8    
19.1    
19.5    
19.9    
20.2    
20.6    
21.0    
21.3    
21.7    
22.1    
22.4    
22.8    
23.2    
23.5    
23.9    
24.3    
24.6    
25.0    
25.4    
25.7    
26.1    
26.5    
26.8    
27.2    
27.6    
27.9    
28.3    
28.7    
29.0    
29.4    
29.8    
30.1    
30.5    
30.9    
31.2    
31.6    
32.0    
32.4    
32.7    
33.1    
33.5    
33.8    
34.2    
34.6    
34.9    
35.3    
35.7    
36.0    
36.4    
36.8    
37.1    
37.5    
37.9    
38.2    
38.6    
39.0    
39.3    
39.7    
40.1    
40.4    
40.8    
41.2    
41.5    
41.9    
42.3    
42.6    
43.0    
43.4    
43.8    
44.1    
44.5    
44.9    
45.2    
45.6    
46.0    
46.3    
46.7    
47.1    
47.4    
47.8    
48.2    
48.5    
48.9    
49.3    
49.6    
50.0    
50.4    
50.7    
51.1    
51.5    
51.8    
52.2    
52.6    
52.9    
53.3    
53.7    
54.0    
54.4    
54.8    
55.1    
55.5    
55.9    
56.2    
56.6    
57.0    
57.4    
57.7    
58.1    
58.5    
58.8    
59.2    
59.6    
59.9    
60.3    
60.7    
61.0    
61.4    
61.8    
62.1    
62.5    
62.9    
63.2    
63.6    
64.0    
64.3    
64.7    
65.1    
65.4    
65.8    
66.2    
66.5    
66.9    
67.3    
67.6    
68.0    
68.4    
68.8    
69.1    
69.5    
69.9    
70.2    
70.6    
71.0    
71.3    
71.7    
72.1    
72.4    
72.8    
73.2    
73.5    
73.9    
74.3    
74.6    
75.0    
75.4    
75.7    
76.1    
76.5    
76.8    
77.2    
77.6    
77.9    
78.3    
78.7    
79.0    
79.4    
79.8    
80.1    
80.5    
80.9    
81.2    
81.6    
82.0    
82.4    
82.7    
83.1    
83.5    
83.8    
84.2    
84.6    
84.9    
85.3    
85.7    
86.0    
86.4    
86.8    
87.1    
87.5    
87.9    
88.2    
88.6    
89.0    
89.3    
89.7    
90.1    
90.4    
90.8    
91.2    
91.5    
91.9    
92.3    
92.6    
93.0    
93.4    
93.8    
94.1    
94.5    
94.9    
95.2    
95.6    
96.0    
96.3    
96.7    
97.1    
97.4    
97.8    
98.2    
98.5    
98.9    
99.3    
99.6    
-found 30 predictions from path traversal
Error with prediction: snap lend_intergenic: 6355, rend_intergenic: 2062  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13422, rend_intergenic: 11674  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20433, rend_intergenic: 13591  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28644, rend_intergenic: 25824  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39345, rend_intergenic: 35228  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43080, rend_intergenic: 41203  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49540, rend_intergenic: 45776  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52211, rend_intergenic: 51662  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56054, rend_intergenic: 53212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79676, rend_intergenic: 75656  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108863, rend_intergenic: 104578  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143187, rend_intergenic: 136457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support