-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_19/scaffold_19_10302018-10468759

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g29668.t1
Valid prediction for snap_scaffold_19-snap.1970-T1
Valid prediction for Augustus_model.g29669.t1
Valid prediction for snap_scaffold_19-snap.1945-T1
Valid prediction for snap_scaffold_19-snap.1953-T1
Valid prediction for snap_scaffold_19-snap.1939-T1
Valid prediction for Augustus_model.g29666.t1
Valid prediction for GlimmerHMM_glimmerT_44724-T1
Valid prediction for GlimmerHMM_glimmerT_44738-T1
Valid prediction for GlimmerHMM_glimmerT_44719-T1
Valid prediction for Augustus_model.g29670.t1
Valid prediction for GlimmerHMM_glimmerT_44731-T1
Valid prediction for snap_scaffold_19-snap.1955-T1
Valid prediction for Augustus_model.g29661.t1
Valid prediction for snap_scaffold_19-snap.1963-T1
Valid prediction for GlimmerHMM_glimmerT_44736-T1
Valid prediction for snap_scaffold_19-snap.1957-T1
Valid prediction for snap_scaffold_19-snap.1942-T1
Valid prediction for GlimmerHMM_glimmerT_44729-T1
Valid prediction for Augustus_model.g29660.t1
Valid prediction for snap_scaffold_19-snap.1972-T1
Valid prediction for snap_scaffold_19-snap.1962-T1
Valid prediction for snap_scaffold_19-snap.1961-T1
Valid prediction for snap_scaffold_19-snap.1966-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_19-snap.1958-T1
Valid prediction for snap_scaffold_19-snap.1952-T1
Valid prediction for snap_scaffold_19-snap.1944-T1
Valid prediction for snap_scaffold_19-snap.1959-T1
Valid prediction for Augustus_model.g29662.t1
Valid prediction for snap_scaffold_19-snap.1948-T1
Valid prediction for snap_scaffold_19-snap.1965-T1
Valid prediction for snap_scaffold_19-snap.1943-T1
Valid prediction for snap_scaffold_19-snap.1950-T1
Valid prediction for GlimmerHMM_glimmerT_44727-T1
Valid prediction for snap_scaffold_19-snap.1954-T1
Valid prediction for snap_scaffold_19-snap.1967-T1
Valid prediction for GlimmerHMM_glimmerT_44732-T1
Valid prediction for snap_scaffold_19-snap.1964-T1
Valid prediction for GlimmerHMM_glimmerT_44720-T1
Valid prediction for snap_scaffold_19-snap.1969-T1
Valid prediction for snap_scaffold_19-snap.1951-T1
Valid prediction for GlimmerHMM_glimmerT_44735-T1
Valid prediction for GlimmerHMM_glimmerT_44723-T1
Valid prediction for snap_scaffold_19-snap.1956-T1
Valid prediction for snap_scaffold_19-snap.1941-T1
Valid prediction for Augustus_model.g29664.t1
Valid prediction for snap_scaffold_19-snap.1946-T1
Valid prediction for GlimmerHMM_glimmerT_44722-T1
Valid prediction for Augustus_model.g29667.t1
Valid prediction for GlimmerHMM_glimmerT_44721-T1
Valid prediction for snap_scaffold_19-snap.1971-T1
Valid prediction for snap_scaffold_19-snap.1968-T1
Valid prediction for GlimmerHMM_glimmerT_44734-T1
Valid prediction for GlimmerHMM_glimmerT_44733-T1
Valid prediction for Augustus_model.g29663.t1
Valid prediction for snap_scaffold_19-snap.1949-T1
Valid prediction for GlimmerHMM_glimmerT_44737-T1
Valid prediction for GlimmerHMM_glimmerT_44725-T1
Valid prediction for GlimmerHMM_glimmerT_44726-T1
Valid prediction for GlimmerHMM_glimmerT_44739-T1
Valid prediction for snap_scaffold_19-snap.1940-T1
Valid prediction for GlimmerHMM_glimmerT_44730-T1
Valid prediction for snap_scaffold_19-snap.1947-T1
Valid prediction for Augustus_model.g29665.t1
Valid prediction for snap_scaffold_19-snap.1960-T1
Valid prediction for GlimmerHMM_glimmerT_44728-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 23547, rend_intergenic: 18029  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61768, rend_intergenic: 60947  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65273, rend_intergenic: 63075  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72714, rend_intergenic: 70168  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153483, rend_intergenic: 146214  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158822, rend_intergenic: 156195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159874, rend_intergenic: 159101  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 166742
-exon list size: 202


building trellis

0.5    
1.0    
1.5    
2.0    
2.5    
2.9    
3.4    
3.9    
4.4    
4.9    
5.4    
5.9    
6.4    
6.9    
7.4    
7.8    
8.3    
8.8    
9.3    
9.8    
10.3    
10.8    
11.3    
11.8    
12.3    
12.7    
13.2    
13.7    
14.2    
14.7    
15.2    
15.7    
16.2    
16.7    
17.2    
17.6    
18.1    
18.6    
19.1    
19.6    
20.1    
20.6    
21.1    
21.6    
22.1    
22.5    
23.0    
23.5    
24.0    
24.5    
25.0    
25.5    
26.0    
26.5    
27.0    
27.5    
27.9    
28.4    
28.9    
29.4    
29.9    
30.4    
30.9    
31.4    
31.9    
32.4    
32.8    
33.3    
33.8    
34.3    
34.8    
35.3    
35.8    
36.3    
36.8    
37.3    
37.7    
38.2    
38.7    
39.2    
39.7    
40.2    
40.7    
41.2    
41.7    
42.2    
42.6    
43.1    
43.6    
44.1    
44.6    
45.1    
45.6    
46.1    
46.6    
47.1    
47.5    
48.0    
48.5    
49.0    
49.5    
50.0    
50.5    
51.0    
51.5    
52.0    
52.5    
52.9    
53.4    
53.9    
54.4    
54.9    
55.4    
55.9    
56.4    
56.9    
57.4    
57.8    
58.3    
58.8    
59.3    
59.8    
60.3    
60.8    
61.3    
61.8    
62.3    
62.7    
63.2    
63.7    
64.2    
64.7    
65.2    
65.7    
66.2    
66.7    
67.2    
67.6    
68.1    
68.6    
69.1    
69.6    
70.1    
70.6    
71.1    
71.6    
72.1    
72.5    
73.0    
73.5    
74.0    
74.5    
75.0    
75.5    
76.0    
76.5    
77.0    
77.5    
77.9    
78.4    
78.9    
79.4    
79.9    
80.4    
80.9    
81.4    
81.9    
82.4    
82.8    
83.3    
83.8    
84.3    
84.8    
85.3    
85.8    
86.3    
86.8    
87.3    
87.7    
88.2    
88.7    
89.2    
89.7    
90.2    
90.7    
91.2    
91.7    
92.2    
92.6    
93.1    
93.6    
94.1    
94.6    
95.1    
95.6    
96.1    
96.6    
97.1    
97.5    
98.0    
98.5    
99.0    
99.5    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 23547, rend_intergenic: 18029  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61768, rend_intergenic: 60947  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65273, rend_intergenic: 63075  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72714, rend_intergenic: 70168  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153483, rend_intergenic: 146214  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158822, rend_intergenic: 156195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159874, rend_intergenic: 159101  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support