-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_19/scaffold_19_10084034-10311027

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_19-snap.1938-T1
Valid prediction for Augustus_model.g29649.t1
Valid prediction for Augustus_model.g29647.t1
Valid prediction for snap_scaffold_19-snap.1918-T1
Valid prediction for GlimmerHMM_glimmerT_44700-T1
Valid prediction for GlimmerHMM_glimmerT_44698-T1
Valid prediction for GlimmerHMM_glimmerT_44682-T1
Valid prediction for snap_scaffold_19-snap.1908-T1
Valid prediction for Augustus_model.g29641.t1
Valid prediction for CodingQuarry_transcript_25771-T1
Valid prediction for snap_scaffold_19-snap.1904-T1
Valid prediction for HiQ_model.g29657.t1
Valid prediction for pasa_asmbl_21640.p1
Valid prediction for GlimmerHMM_glimmerT_44690-T1
Valid prediction for GlimmerHMM_glimmerT_44686-T1
Valid prediction for Augustus_model.g29644.t1
Valid prediction for GlimmerHMM_glimmerT_44709-T1
Valid prediction for snap_scaffold_19-snap.1905-T1
Valid prediction for snap_scaffold_19-snap.1930-T1
Valid prediction for snap_scaffold_19-snap.1901-T1
Valid prediction for GlimmerHMM_glimmerT_44715-T1
Valid prediction for GlimmerHMM_glimmerT_44711-T1
Valid prediction for snap_scaffold_19-snap.1902-T1
Valid prediction for Augustus_model.g29655.t1
Valid prediction for snap_scaffold_19-snap.1937-T1
Valid prediction for snap_scaffold_19-snap.1903-T1
Valid prediction for pasa_asmbl_21911.p1
Valid prediction for snap_scaffold_19-snap.1931-T1
Valid prediction for snap_scaffold_19-snap.1925-T1
Couldn't classify 136893, 136945
Sorry, prediction pasa_asmbl_21627.p1 fails validation.
(GAA)	 AC	136893-136945	GT	AAG
(GGT)	 AG	137321-137408	GT	AGG
(ACC)	 AG	139547-139613	GT	CTG
(GTG)	 AG	140361-140410	GT	AGG
(GAG)	 AG	140547-140645	GT	AGG
(TTC)	 AG	140762-140895	GT	GGG
(AGA)	 AG	141118-141210	GT	AGG
(ACA)	 AG	141364-141493	AT	AAA
-recovered pasa_asmbl_21627.p1, terminal, 141364, 141493
-recovered pasa_asmbl_21627.p1, internal, 137321, 137408
-recovered pasa_asmbl_21627.p1, internal, 139547, 139613
-recovered pasa_asmbl_21627.p1, internal, 140361, 140410
-recovered pasa_asmbl_21627.p1, internal, 140547, 140645
-recovered pasa_asmbl_21627.p1, internal, 140762, 140895
-recovered pasa_asmbl_21627.p1, internal, 141118, 141210
Valid prediction for GlimmerHMM_glimmerT_44713-T1
Valid prediction for snap_scaffold_19-snap.1929-T1
Valid prediction for GlimmerHMM_glimmerT_44707-T1
Valid prediction for snap_scaffold_19-snap.1899-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_19-snap.1900-T1
Valid prediction for HiQ_model.g29656.t1
Couldn't classify 126551, 126642
Sorry, prediction pasa_asmbl_21625.p1 fails validation.
(ATG)	 TA	123223-123313	GT	AGG
(CTG)	 AG	123452-123775	GT	TGG
(GCG)	 AG	124194-124523	GT	TGG
(TGC)	 AG	125829-126113	GT	TAG
(TGG)	 AG	126551-126642	TG	TCT
-recovered pasa_asmbl_21625.p1, initial, 123223, 123313
-recovered pasa_asmbl_21625.p1, internal, 123452, 123775
-recovered pasa_asmbl_21625.p1, internal, 124194, 124523
-recovered pasa_asmbl_21625.p1, internal, 125829, 126113
Valid prediction for pasa_asmbl_21635.p1
Valid prediction for Augustus_model.g29645.t1
Valid prediction for GlimmerHMM_glimmerT_44684-T1
Valid prediction for snap_scaffold_19-snap.1933-T1
Valid prediction for snap_scaffold_19-snap.1913-T1
Valid prediction for GlimmerHMM_glimmerT_44710-T1
Valid prediction for snap_scaffold_19-snap.1921-T1
Valid prediction for GlimmerHMM_glimmerT_44695-T1
Valid prediction for snap_scaffold_19-snap.1928-T1
Valid prediction for snap_scaffold_19-snap.1906-T1
Valid prediction for snap_scaffold_19-snap.1912-T1
Valid prediction for Augustus_model.g29650.t1
Valid prediction for CodingQuarry_transcript_25781-T1
Valid prediction for GlimmerHMM_glimmerT_44683-T1
Valid prediction for snap_scaffold_19-snap.1923-T1
Valid prediction for snap_scaffold_19-snap.1898-T1
Valid prediction for CodingQuarry_transcript_25777-T1
Valid prediction for Augustus_model.g29639.t1
Valid prediction for snap_scaffold_19-snap.1939-T1
Couldn't classify 166198, 166344
Sorry, prediction pasa_asmbl_21636.p1 fails validation.
(ATG)	 AC	164212-164409	GT	AGG
(CTG)	 AG	166198-166344	AG	ACA
-recovered pasa_asmbl_21636.p1, initial, 164212, 164409
Valid prediction for HiQ_model.g29640.t1
Valid prediction for GlimmerHMM_glimmerT_44701-T1
Valid prediction for GlimmerHMM_glimmerT_44714-T1
Valid prediction for CodingQuarry_transcript_25772-T1
Valid prediction for GlimmerHMM_glimmerT_44716-T1
Valid prediction for GlimmerHMM_glimmerT_44693-T1
Valid prediction for pasa_asmbl_21617.p1
Valid prediction for Augustus_model.g29654.t1
Valid prediction for GlimmerHMM_glimmerT_44703-T1
Valid prediction for Augustus_model.g29653.t1
Valid prediction for snap_scaffold_19-snap.1932-T1
Valid prediction for GlimmerHMM_glimmerT_44691-T1
Valid prediction for GlimmerHMM_glimmerT_44685-T1
Valid prediction for GlimmerHMM_glimmerT_44718-T1
Valid prediction for Augustus_model.g29660.t1
Valid prediction for snap_scaffold_19-snap.1919-T1
Valid prediction for snap_scaffold_19-snap.1907-T1
Valid prediction for snap_scaffold_19-snap.1909-T1
Valid prediction for snap_scaffold_19-snap.1916-T1
Valid prediction for Augustus_model.g29658.t1
Valid prediction for GlimmerHMM_glimmerT_44697-T1
Valid prediction for pasa_asmbl_21638.p1
Valid prediction for GlimmerHMM_glimmerT_44687-T1
Valid prediction for CodingQuarry_transcript_25780-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_19-snap.1915-T1
Valid prediction for snap_scaffold_19-snap.1926-T1
Valid prediction for snap_scaffold_19-snap.1897-T1
Valid prediction for snap_scaffold_19-snap.1920-T1
Valid prediction for snap_scaffold_19-snap.1934-T1
Valid prediction for snap_scaffold_19-snap.1917-T1
Valid prediction for snap_scaffold_19-snap.1922-T1
Valid prediction for snap_scaffold_19-snap.1924-T1
Valid prediction for pasa_asmbl_22347.p1
Valid prediction for snap_scaffold_19-snap.1910-T1
Valid prediction for CodingQuarry_transcript_25778-T1
Valid prediction for Augustus_model.g29646.t1
Valid prediction for CodingQuarry_transcript_25776-T1
Valid prediction for HiQ_model.g29651.t1
Valid prediction for GlimmerHMM_glimmerT_44681-T1
Valid prediction for HiQ_model.g29643.t1
Valid prediction for snap_scaffold_19-snap.1911-T1
Valid prediction for GlimmerHMM_glimmerT_44699-T1
Valid prediction for GlimmerHMM_glimmerT_44688-T1
Valid prediction for snap_scaffold_19-snap.1914-T1
Valid prediction for GlimmerHMM_glimmerT_44696-T1
Valid prediction for snap_scaffold_19-snap.1936-T1
Valid prediction for Augustus_model.g29652.t1
Valid prediction for snap_scaffold_19-snap.1896-T1
Valid prediction for GlimmerHMM_glimmerT_44706-T1
Valid prediction for GlimmerHMM_glimmerT_44704-T1
Valid prediction for GlimmerHMM_glimmerT_44694-T1
Valid prediction for GlimmerHMM_glimmerT_44702-T1
Valid prediction for GlimmerHMM_glimmerT_44712-T1
Valid prediction for GlimmerHMM_glimmerT_44708-T1
Valid prediction for snap_scaffold_19-snap.1935-T1
Valid prediction for Augustus_model.g29659.t1
Valid prediction for GlimmerHMM_glimmerT_44689-T1
Valid prediction for snap_scaffold_19-snap.1927-T1
Valid prediction for CodingQuarry_transcript_25779-T1
Valid prediction for GlimmerHMM_glimmerT_44692-T1
Valid prediction for Augustus_model.g29642.t1
Valid prediction for pasa_asmbl_22346.p1
Valid prediction for GlimmerHMM_glimmerT_44705-T1
Valid prediction for GlimmerHMM_glimmerT_44717-T1
Valid prediction for Augustus_model.g29648.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 73151, rend_intergenic: 70023  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86717, rend_intergenic: 84576  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148297, rend_intergenic: 144740  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151522, rend_intergenic: 149684  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202785, rend_intergenic: 198962  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 226994
-exon list size: 390


building trellis

0.3    
0.5    
0.8    
1.0    
1.3    
1.5    
1.8    
2.0    
2.3    
2.6    
2.8    
3.1    
3.3    
3.6    
3.8    
4.1    
4.3    
4.6    
4.8    
5.1    
5.4    
5.6    
5.9    
6.1    
6.4    
6.6    
6.9    
7.1    
7.4    
7.7    
7.9    
8.2    
8.4    
8.7    
8.9    
9.2    
9.4    
9.7    
9.9    
10.2    
10.5    
10.7    
11.0    
11.2    
11.5    
11.7    
12.0    
12.2    
12.5    
12.8    
13.0    
13.3    
13.5    
13.8    
14.0    
14.3    
14.5    
14.8    
15.1    
15.3    
15.6    
15.8    
16.1    
16.3    
16.6    
16.8    
17.1    
17.3    
17.6    
17.9    
18.1    
18.4    
18.6    
18.9    
19.1    
19.4    
19.6    
19.9    
20.2    
20.4    
20.7    
20.9    
21.2    
21.4    
21.7    
21.9    
22.2    
22.4    
22.7    
23.0    
23.2    
23.5    
23.7    
24.0    
24.2    
24.5    
24.7    
25.0    
25.3    
25.5    
25.8    
26.0    
26.3    
26.5    
26.8    
27.0    
27.3    
27.6    
27.8    
28.1    
28.3    
28.6    
28.8    
29.1    
29.3    
29.6    
29.8    
30.1    
30.4    
30.6    
30.9    
31.1    
31.4    
31.6    
31.9    
32.1    
32.4    
32.7    
32.9    
33.2    
33.4    
33.7    
33.9    
34.2    
34.4    
34.7    
34.9    
35.2    
35.5    
35.7    
36.0    
36.2    
36.5    
36.7    
37.0    
37.2    
37.5    
37.8    
38.0    
38.3    
38.5    
38.8    
39.0    
39.3    
39.5    
39.8    
40.1    
40.3    
40.6    
40.8    
41.1    
41.3    
41.6    
41.8    
42.1    
42.3    
42.6    
42.9    
43.1    
43.4    
43.6    
43.9    
44.1    
44.4    
44.6    
44.9    
45.2    
45.4    
45.7    
45.9    
46.2    
46.4    
46.7    
46.9    
47.2    
47.4    
47.7    
48.0    
48.2    
48.5    
48.7    
49.0    
49.2    
49.5    
49.7    
50.0    
50.3    
50.5    
50.8    
51.0    
51.3    
51.5    
51.8    
52.0    
52.3    
52.6    
52.8    
53.1    
53.3    
53.6    
53.8    
54.1    
54.3    
54.6    
54.8    
55.1    
55.4    
55.6    
55.9    
56.1    
56.4    
56.6    
56.9    
57.1    
57.4    
57.7    
57.9    
58.2    
58.4    
58.7    
58.9    
59.2    
59.4    
59.7    
59.9    
60.2    
60.5    
60.7    
61.0    
61.2    
61.5    
61.7    
62.0    
62.2    
62.5    
62.8    
63.0    
63.3    
63.5    
63.8    
64.0    
64.3    
64.5    
64.8    
65.1    
65.3    
65.6    
65.8    
66.1    
66.3    
66.6    
66.8    
67.1    
67.3    
67.6    
67.9    
68.1    
68.4    
68.6    
68.9    
69.1    
69.4    
69.6    
69.9    
70.2    
70.4    
70.7    
70.9    
71.2    
71.4    
71.7    
71.9    
72.2    
72.4    
72.7    
73.0    
73.2    
73.5    
73.7    
74.0    
74.2    
74.5    
74.7    
75.0    
75.3    
75.5    
75.8    
76.0    
76.3    
76.5    
76.8    
77.0    
77.3    
77.6    
77.8    
78.1    
78.3    
78.6    
78.8    
79.1    
79.3    
79.6    
79.8    
80.1    
80.4    
80.6    
80.9    
81.1    
81.4    
81.6    
81.9    
82.1    
82.4    
82.7    
82.9    
83.2    
83.4    
83.7    
83.9    
84.2    
84.4    
84.7    
84.9    
85.2    
85.5    
85.7    
86.0    
86.2    
86.5    
86.7    
87.0    
87.2    
87.5    
87.8    
88.0    
88.3    
88.5    
88.8    
89.0    
89.3    
89.5    
89.8    
90.1    
90.3    
90.6    
90.8    
91.1    
91.3    
91.6    
91.8    
92.1    
92.3    
92.6    
92.9    
93.1    
93.4    
93.6    
93.9    
94.1    
94.4    
94.6    
94.9    
95.2    
95.4    
95.7    
95.9    
96.2    
96.4    
96.7    
96.9    
97.2    
97.4    
97.7    
98.0    
98.2    
98.5    
98.7    
99.0    
99.2    
99.5    
99.7    
-found 39 predictions from path traversal
Error with prediction: snap lend_intergenic: 73151, rend_intergenic: 70023  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86717, rend_intergenic: 84576  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148297, rend_intergenic: 144740  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151522, rend_intergenic: 149684  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202785, rend_intergenic: 198962  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 36 predictions persist after filtering for low support