-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1895

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61379-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61379-T1 502-700-terminal-1 is invalid.
Couldn't classify 184, 283
Sorry, prediction Augustus_model.g40682.t1 fails validation.
(GTT)	 AG	184-283	GT	CAG
(TTG)	 AG	411-700	CT	GAC
-recovered Augustus_model.g40682.t1, terminal, 411, 700
-recovered Augustus_model.g40682.t1, internal, 184, 283
Valid prediction for snap_scaffold_1895-snap.1-T1
add_exon() Sorry, snap_scaffold_1895-snap.1-T1 411-700-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1803
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support