-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1893

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 379, 457
Couldn't classify 1678, 1787
Sorry, prediction snap_scaffold_1893-snap.1-T1 fails validation.
(ACC)	 AG	379-457	GT	GGG
(CCT)	 AG	927-1097	GT	GGG
(GAA)	 AG	1559-1634	GT	ATG
(GAG)	 AG	1678-1787	GT	AAG
-recovered snap_scaffold_1893-snap.1-T1, internal, 379, 457
-recovered snap_scaffold_1893-snap.1-T1, internal, 927, 1097
-recovered snap_scaffold_1893-snap.1-T1, internal, 1559, 1634
-recovered snap_scaffold_1893-snap.1-T1, internal, 1678, 1787

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61377-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61377-T1 618-928-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1807
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support