-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_189

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 481, 657
Sorry, prediction snap_scaffold_189-snap.2-T1 fails validation.
(GTG)	 AG	481-657	GT	AGG
(CCA)	 AG	4092-4286	GG	GAG
-recovered snap_scaffold_189-snap.2-T1, terminal, 4092, 4286
-recovered snap_scaffold_189-snap.2-T1, internal, 481, 657

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4983, 5096
Sorry, prediction GlimmerHMM_glimmerT_59977-T1 fails validation.
(GTG)	 AG	4983-5096	GT	AGG
(CTG)	 AG	5530-5631	GT	GGG
(ATG)	 AG	5719-5911	GT	CTG
(GGG)	 AG	7094-7206	GT	CTG
(ACC)	 AG	8364-8472	GT	TGG
(AGA)	 AG	8960-9045	GT	AGG
(AGG)	 AG	9362-9556	AA	GAA
-recovered GlimmerHMM_glimmerT_59977-T1, initial, 5719, 5911
-recovered GlimmerHMM_glimmerT_59977-T1, terminal, 9362, 9556
-recovered GlimmerHMM_glimmerT_59977-T1, internal, 4983, 5096
-recovered GlimmerHMM_glimmerT_59977-T1, internal, 5530, 5631
-recovered GlimmerHMM_glimmerT_59977-T1, internal, 5719, 5911
-recovered GlimmerHMM_glimmerT_59977-T1, internal, 7094, 7206
-recovered GlimmerHMM_glimmerT_59977-T1, internal, 8364, 8472
-recovered GlimmerHMM_glimmerT_59977-T1, internal, 8960, 9045
Couldn't classify 9832, 9913
Sorry, prediction snap_scaffold_189-snap.1-T1 fails validation.
(ATG)	 GA	4496-4573	GT	GAG
(GTG)	 AG	4983-5096	GT	AGG
(CTG)	 AG	5530-5631	GT	GGG
(ATG)	 AG	5719-5911	GT	CTG
(GGG)	 AG	7094-7206	GT	CTG
(ACC)	 AG	8364-8472	GT	TGG
(AGA)	 AG	8960-9045	GT	AGG
(AGG)	 AG	9362-9529	GT	AGG
(GCA)	 AG	9832-9913	GT	AGG
-recovered snap_scaffold_189-snap.1-T1, initial, 4496, 4573
-recovered snap_scaffold_189-snap.1-T1, initial, 5719, 5911
-recovered snap_scaffold_189-snap.1-T1, internal, 4983, 5096
-recovered snap_scaffold_189-snap.1-T1, internal, 5530, 5631
-recovered snap_scaffold_189-snap.1-T1, internal, 5719, 5911
-recovered snap_scaffold_189-snap.1-T1, internal, 7094, 7206
-recovered snap_scaffold_189-snap.1-T1, internal, 8364, 8472
-recovered snap_scaffold_189-snap.1-T1, internal, 8960, 9045
-recovered snap_scaffold_189-snap.1-T1, internal, 9362, 9529
-recovered snap_scaffold_189-snap.1-T1, internal, 9832, 9913
Couldn't classify 9757, 9913
Sorry, prediction Augustus_model.g39723.t1 fails validation.
(ATG)	 GA	4496-4573	GT	GAG
(GTG)	 AG	4983-5096	GT	AGG
(CTG)	 AG	5530-5631	GT	GGG
(ATG)	 AG	5719-5911	GT	CTG
(GGA)	 AG	6372-6470	GT	AGG
(GGG)	 AG	7094-7206	GT	CTG
(ACC)	 AG	8364-8472	GT	TGG
(AGA)	 AG	8960-9045	GT	AGG
(AGG)	 AG	9362-9529	GT	AGG
(TGG)	 AG	9757-9913	GT	AGG
-recovered Augustus_model.g39723.t1, initial, 4496, 4573
-recovered Augustus_model.g39723.t1, initial, 5719, 5911
-recovered Augustus_model.g39723.t1, internal, 4983, 5096
-recovered Augustus_model.g39723.t1, internal, 5530, 5631
-recovered Augustus_model.g39723.t1, internal, 5719, 5911
-recovered Augustus_model.g39723.t1, internal, 6372, 6470
-recovered Augustus_model.g39723.t1, internal, 7094, 7206
-recovered Augustus_model.g39723.t1, internal, 8364, 8472
-recovered Augustus_model.g39723.t1, internal, 8960, 9045
-recovered Augustus_model.g39723.t1, internal, 9362, 9529
-recovered Augustus_model.g39723.t1, internal, 9757, 9913

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5505, rend_intergenic: 481  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 10000
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5505, rend_intergenic: 481  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support