-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1888

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61376-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1385, 1462
Sorry, prediction snap_scaffold_1888-snap.1-T1 fails validation.
(ATG)	 AA	317-343	GT	ACG
(CGA)	 AG	689-794	GT	AAG
(GCA)	 AG	1385-1462	GT	CGG
-recovered snap_scaffold_1888-snap.1-T1, initial, 317, 343
-recovered snap_scaffold_1888-snap.1-T1, internal, 689, 794
-recovered snap_scaffold_1888-snap.1-T1, internal, 1385, 1462
Couldn't classify 1651, 1714
Sorry, prediction Augustus_model.g40680.t1 fails validation.
(ATG)	 AA	1086-1104	GT	CCG
(GCA)	 AG	1385-1462	GT	CGG
(ACT)	 AG	1651-1714	GT	AGG
-recovered Augustus_model.g40680.t1, initial, 1086, 1104
-recovered Augustus_model.g40680.t1, internal, 1385, 1462
-recovered Augustus_model.g40680.t1, internal, 1651, 1714

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1812
-exon list size: 8


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support