-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1880

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1425, 1728
Sorry, prediction GlimmerHMM_glimmerT_61371-T1 fails validation.
(ATG)	 AG	1184-1219	GT	AGG
(TTG)	 AG	1425-1728	GT	CAG
-recovered GlimmerHMM_glimmerT_61371-T1, initial, 1184, 1219
-recovered GlimmerHMM_glimmerT_61371-T1, internal, 1184, 1219
-recovered GlimmerHMM_glimmerT_61371-T1, internal, 1425, 1728

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 673, 693
Sorry, prediction snap_scaffold_1880-snap.1-T1 fails validation.
(ATG)	 TA	8-404	GT	GGG
(ATG)	 AG	673-693	GT	AGG
-recovered snap_scaffold_1880-snap.1-T1, initial, 8, 404
add_exon() Sorry, snap_scaffold_1880-snap.1-T1 673-693-initial-1 is invalid.
-recovered snap_scaffold_1880-snap.1-T1, initial, 673, 693
-recovered snap_scaffold_1880-snap.1-T1, internal, 673, 693

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1820
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support