-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1875

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1491, 1703
Sorry, prediction snap_scaffold_1875-snap.2-T1 fails validation.
(ACA)	 AG	1491-1703	GT	AGG
-recovered snap_scaffold_1875-snap.2-T1, internal, 1491, 1703
Couldn't classify 979, 1059
Couldn't classify 1491, 1683
Sorry, prediction Augustus_model.g40676.t1 fails validation.
(AGA)	 AG	979-1059	GT	AGG
(ACA)	 AG	1491-1683	GT	AGG
-recovered Augustus_model.g40676.t1, internal, 979, 1059
-recovered Augustus_model.g40676.t1, internal, 1491, 1683
Valid prediction for GlimmerHMM_glimmerT_61370-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1875-snap.1-T1
add_exon() Sorry, snap_scaffold_1875-snap.1-T1 784-974-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1824
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support