-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_186

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9875, 9969
Sorry, prediction snap_scaffold_186-snap.3-T1 fails validation.
(ATG)	 AC	8878-8932	GT	AGG
(AGA)	 AG	9699-9733	GT	TGG
(GGG)	 AG	9875-9969	GT	CGG
-recovered snap_scaffold_186-snap.3-T1, initial, 8878, 8932
-recovered snap_scaffold_186-snap.3-T1, internal, 9699, 9733
-recovered snap_scaffold_186-snap.3-T1, internal, 9875, 9969
Valid prediction for Augustus_model.g39722.t1
Valid prediction for GlimmerHMM_glimmerT_59975-T1
Valid prediction for GlimmerHMM_glimmerT_59974-T1
add_exon() Sorry, GlimmerHMM_glimmerT_59974-T1 6909-7465-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g39721.t1
Couldn't classify 1767, 1862
Sorry, prediction snap_scaffold_186-snap.2-T1 fails validation.
(GAA)	 AG	1767-1862	GT	CGG
(CCC)	 AG	2774-3340	AA	GAA
-recovered snap_scaffold_186-snap.2-T1, terminal, 2774, 3340
-recovered snap_scaffold_186-snap.2-T1, internal, 1767, 1862
Couldn't classify 9516, 9612
Sorry, prediction snap_scaffold_186-snap.1-T1 fails validation.
(ATG)	 GC	4266-4277	GT	AGG
(GCC)	 AG	5275-5417	GT	GGG
(CCA)	 AG	9516-9612	GT	TGG
-recovered snap_scaffold_186-snap.1-T1, initial, 4266, 4277
-recovered snap_scaffold_186-snap.1-T1, internal, 5275, 5417
-recovered snap_scaffold_186-snap.1-T1, internal, 9516, 9612

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 10089
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support