-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1859

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1460, 1534
Sorry, prediction snap_scaffold_1859-snap.2-T1 fails validation.
(ATG)	 TG	708-1055	GT	GTG
(TAC)	 AG	1460-1534	GT	ACG
-recovered snap_scaffold_1859-snap.2-T1, initial, 708, 1055
-recovered snap_scaffold_1859-snap.2-T1, internal, 1460, 1534
Valid prediction for GlimmerHMM_glimmerT_61362-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61362-T1 290-473-terminal-1 is invalid.
Valid prediction for snap_scaffold_1859-snap.1-T1
add_exon() Sorry, snap_scaffold_1859-snap.1-T1 290-473-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1849
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support