-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1853

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61359-T1
Couldn't classify 166, 276
Sorry, prediction Augustus_model.g40669.t1 fails validation.
(GGA)	 AG	166-276	GT	GAG
(TGG)	 AG	421-569	GT	CAG
(AGC)	 AG	1313-1325	GT	AAG
-recovered Augustus_model.g40669.t1, terminal, 1313, 1325
-recovered Augustus_model.g40669.t1, internal, 166, 276
-recovered Augustus_model.g40669.t1, internal, 421, 569
-recovered Augustus_model.g40669.t1, internal, 1313, 1325
Couldn't classify 166, 276
Couldn't classify 1313, 1321
Sorry, prediction snap_scaffold_1853-snap.1-T1 fails validation.
(GGA)	 AG	166-276	GT	GAG
(GTC)	 AG	442-528	GT	AGG
(AGC)	 AG	1313-1321	GT	AAG
-recovered snap_scaffold_1853-snap.1-T1, internal, 166, 276
-recovered snap_scaffold_1853-snap.1-T1, internal, 442, 528
-recovered snap_scaffold_1853-snap.1-T1, internal, 1313, 1321

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 340, 553
Sorry, prediction GlimmerHMM_glimmerT_61360-T1 fails validation.
(GGA)	 AG	340-553	GT	CAG
(GAA)	 AG	1155-1274	TA	AGT
-recovered GlimmerHMM_glimmerT_61360-T1, terminal, 1155, 1274
-recovered GlimmerHMM_glimmerT_61360-T1, internal, 340, 553

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1860
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support