-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1851

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1153, 1841
Sorry, prediction snap_scaffold_1851-snap.1-T1 fails validation.
(ATG)	 CA	440-463	GT	TGG
(AAG)	 AG	618-713	GT	AGG
(GTA)	 AG	734-812	GT	AGG
(CGT)	 AG	1153-1841	GT	AAG
-recovered snap_scaffold_1851-snap.1-T1, initial, 440, 463
-recovered snap_scaffold_1851-snap.1-T1, internal, 618, 713
-recovered snap_scaffold_1851-snap.1-T1, internal, 734, 812
-recovered snap_scaffold_1851-snap.1-T1, internal, 1153, 1841
Couldn't classify 477, 534
Sorry, prediction Augustus_model.g40668.t1 fails validation.
(GCT)	 AG	477-534	GT	CAG
(ACA)	 AG	703-812	GT	AGG
(CGT)	 AG	1153-1408	GT	CGG
(AAG)	 AG	1798-1807	CA	GAC
-recovered Augustus_model.g40668.t1, terminal, 1798, 1807
-recovered Augustus_model.g40668.t1, internal, 477, 534
-recovered Augustus_model.g40668.t1, internal, 703, 812
-recovered Augustus_model.g40668.t1, internal, 1153, 1408
Couldn't classify 1153, 1866
Sorry, prediction GlimmerHMM_glimmerT_61357-T1 fails validation.
(ATG)	 CC	461-534	GT	CAG
(ACA)	 AG	703-812	GT	AGG
(CGT)	 AG	1153-1866		TG
-recovered GlimmerHMM_glimmerT_61357-T1, initial, 461, 534
-recovered GlimmerHMM_glimmerT_61357-T1, internal, 703, 812

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1866
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support