-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_185

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39719.t1
Couldn't classify 9602, 9726
Sorry, prediction GlimmerHMM_glimmerT_59973-T1 fails validation.
(ATG)	 GG	5997-6124	GT	GGG
(GTG)	 AG	8462-8516	GT	AGG
(GGT)	 AG	9266-9345	GT	GGG
(TCT)	 AG	9602-9726	GT	AGG
-recovered GlimmerHMM_glimmerT_59973-T1, initial, 5997, 6124
-recovered GlimmerHMM_glimmerT_59973-T1, internal, 8462, 8516
-recovered GlimmerHMM_glimmerT_59973-T1, internal, 9266, 9345
-recovered GlimmerHMM_glimmerT_59973-T1, internal, 9602, 9726
Couldn't classify 9602, 9726
Sorry, prediction Augustus_model.g39720.t1 fails validation.
(ATG)	 CC	8318-8343	GT	AGG
(GTG)	 AG	8462-8516	GT	AGG
(GGT)	 AG	9266-9345	GT	GGG
(TCT)	 AG	9602-9726	GT	AGG
-recovered Augustus_model.g39720.t1, initial, 8318, 8343
-recovered Augustus_model.g39720.t1, internal, 8462, 8516
-recovered Augustus_model.g39720.t1, internal, 9266, 9345
-recovered Augustus_model.g39720.t1, internal, 9602, 9726
Couldn't classify 9602, 9726
Sorry, prediction snap_scaffold_185-snap.2-T1 fails validation.
(ATG)	 GA	1364-1504	GT	GAG
(TTG)	 AG	5931-6134	GT	GGG
(GCT)	 AG	6787-6882	GT	GGG
(AAC)	 AG	8475-8516	GT	AGG
(GGT)	 AG	9266-9345	GT	GGG
(TCT)	 AG	9602-9726	GT	AGG
-recovered snap_scaffold_185-snap.2-T1, initial, 1364, 1504
-recovered snap_scaffold_185-snap.2-T1, internal, 5931, 6134
-recovered snap_scaffold_185-snap.2-T1, internal, 6787, 6882
-recovered snap_scaffold_185-snap.2-T1, internal, 8475, 8516
-recovered snap_scaffold_185-snap.2-T1, internal, 9266, 9345
-recovered snap_scaffold_185-snap.2-T1, internal, 9602, 9726

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1824, 2147
Sorry, prediction snap_scaffold_185-snap.3-T1 fails validation.
(AAG)	 AG	1824-2147	GT	AGG
(GCA)	 AG	4116-4174	GG	GAG
add_exon() Sorry, snap_scaffold_185-snap.3-T1 1824-2147-terminal-1 is invalid.
-recovered snap_scaffold_185-snap.3-T1, terminal, 1824, 2147
-recovered snap_scaffold_185-snap.3-T1, terminal, 4116, 4174
-recovered snap_scaffold_185-snap.3-T1, internal, 1824, 2147
Couldn't classify 9611, 9715
Sorry, prediction snap_scaffold_185-snap.1-T1 fails validation.
(ATG)	 GG	6311-6561	GT	GGG
(AAT)	 AG	9166-9343	GT	AGG
(AAG)	 AG	9611-9715	GT	AGG
-recovered snap_scaffold_185-snap.1-T1, initial, 6311, 6561
-recovered snap_scaffold_185-snap.1-T1, internal, 9166, 9343
-recovered snap_scaffold_185-snap.1-T1, internal, 9611, 9715
Valid prediction for GlimmerHMM_glimmerT_59972-T1
Couldn't classify 9611, 9715
Sorry, prediction Augustus_model.g39718.t1 fails validation.
(ATG)	 AG	9206-9343	GT	AGG
(AAG)	 AG	9611-9715	GT	AGG
-recovered Augustus_model.g39718.t1, initial, 9206, 9343
-recovered Augustus_model.g39718.t1, internal, 9206, 9343
-recovered Augustus_model.g39718.t1, internal, 9611, 9715

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3790, rend_intergenic: 1364  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9726, rend_intergenic: 5927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 10100
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 3790, rend_intergenic: 1364  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9726, rend_intergenic: 5927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support