-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1838

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 224, 240
Couldn't classify 1296, 1324
Sorry, prediction snap_scaffold_1838-snap.1-T1 fails validation.
(AGC)	 AG	224-240	GT	GGG
(AGA)	 AG	653-883	GT	AAG
(ACC)	 AG	1002-1161	GT	GGG
(TTT)	 AG	1296-1324	GT	TGG
-recovered snap_scaffold_1838-snap.1-T1, internal, 224, 240
-recovered snap_scaffold_1838-snap.1-T1, internal, 653, 883
-recovered snap_scaffold_1838-snap.1-T1, internal, 1002, 1161
-recovered snap_scaffold_1838-snap.1-T1, internal, 1296, 1324
Couldn't classify 653, 760
Sorry, prediction GlimmerHMM_glimmerT_61353-T1 fails validation.
(AGA)	 AG	653-760	GT	AGG
(ACC)	 AG	1002-1190	AC	GAA
-recovered GlimmerHMM_glimmerT_61353-T1, terminal, 1002, 1190
-recovered GlimmerHMM_glimmerT_61353-T1, internal, 653, 760

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1885
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support