-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_183

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 388, 468
Sorry, prediction snap_scaffold_183-snap.1-T1 fails validation.
(CTG)	 AG	388-468	GT	AGG
(CTG)	 AG	1780-1840	GT	AGG
(AGG)	 AG	1984-2014	GT	GGG
(CTG)	 AG	2055-2114	GT	AGG
(CTG)	 AG	2328-2388	GT	AGG
(GAG)	 AG	3169-3295	GT	AGG
(GAG)	 AG	4059-4113	AG	AAA
-recovered snap_scaffold_183-snap.1-T1, terminal, 4059, 4113
-recovered snap_scaffold_183-snap.1-T1, internal, 388, 468
-recovered snap_scaffold_183-snap.1-T1, internal, 1780, 1840
-recovered snap_scaffold_183-snap.1-T1, internal, 1984, 2014
-recovered snap_scaffold_183-snap.1-T1, internal, 2055, 2114
-recovered snap_scaffold_183-snap.1-T1, internal, 2328, 2388
-recovered snap_scaffold_183-snap.1-T1, internal, 3169, 3295

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59969-T1
Valid prediction for GlimmerHMM_glimmerT_59970-T1
add_exon() Sorry, GlimmerHMM_glimmerT_59970-T1 1242-1638-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 10185
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support