-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1821

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61341-T1
Couldn't classify 209, 408
Couldn't classify 1455, 1526
Sorry, prediction Augustus_model.g40655.t1 fails validation.
(CTC)	 AG	209-408	GT	AGG
(TGT)	 AG	550-887	GT	AGG
(GAG)	 AG	1455-1526	GT	AGG
-recovered Augustus_model.g40655.t1, internal, 209, 408
-recovered Augustus_model.g40655.t1, internal, 550, 887
-recovered Augustus_model.g40655.t1, internal, 1455, 1526
Couldn't classify 209, 408
Couldn't classify 1455, 1526
Sorry, prediction snap_scaffold_1821-snap.1-T1 fails validation.
(CTC)	 AG	209-408	GT	AGG
(TGT)	 AG	550-887	GT	AGG
(GAG)	 AG	1455-1526	GT	AGG
-recovered snap_scaffold_1821-snap.1-T1, internal, 209, 408
-recovered snap_scaffold_1821-snap.1-T1, internal, 550, 887
-recovered snap_scaffold_1821-snap.1-T1, internal, 1455, 1526
Valid prediction for GlimmerHMM_glimmerT_61342-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61342-T1 209-446-terminal-1 is invalid.
Couldn't classify 234, 408
Couldn't classify 1455, 1526
Sorry, prediction pasa_asmbl_21155.p1 fails validation.
(GCC)	 CA	234-408	GT	AGG
(TGT)	 AG	550-887	GT	AGG
(GAG)	 AG	1455-1526	GT	AGG
-recovered pasa_asmbl_21155.p1, internal, 550, 887
-recovered pasa_asmbl_21155.p1, internal, 1455, 1526

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1911
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support