-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1816

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 961, 1040
Couldn't classify 1690, 1816
Sorry, prediction snap_scaffold_1816-snap.1-T1 fails validation.
(AAG)	 AG	961-1040	GT	GGG
(ACG)	 AG	1053-1425	GT	ATG
(AAT)	 AG	1690-1816	GT	AGG
-recovered snap_scaffold_1816-snap.1-T1, internal, 961, 1040
-recovered snap_scaffold_1816-snap.1-T1, internal, 1053, 1425
-recovered snap_scaffold_1816-snap.1-T1, internal, 1690, 1816
Valid prediction for GlimmerHMM_glimmerT_61338-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1913
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support