-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1814

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61336-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61336-T1 142-544-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 108, 224
Sorry, prediction snap_scaffold_1814-snap.1-T1 fails validation.
(AGC)	 AG	108-224	GT	AGG
(AAG)	 AG	365-486	GT	CAG
(GAA)	 AG	588-980	GT	CAG
(GAC)	 AG	1321-1381	GT	TGG
(GGA)	 AG	1673-1765	CT	GAC
-recovered snap_scaffold_1814-snap.1-T1, terminal, 1673, 1765
-recovered snap_scaffold_1814-snap.1-T1, internal, 108, 224
-recovered snap_scaffold_1814-snap.1-T1, internal, 365, 486
-recovered snap_scaffold_1814-snap.1-T1, internal, 588, 980
-recovered snap_scaffold_1814-snap.1-T1, internal, 1321, 1381
Couldn't classify 108, 224
Sorry, prediction pasa_asmbl_21154.p1 fails validation.
(AGC)	 AG	108-224	GT	AGG
(AAG)	 AG	365-486	GT	CAG
(GAA)	 AG	588-984	GT	AAG
-recovered pasa_asmbl_21154.p1, terminal, 588, 984
-recovered pasa_asmbl_21154.p1, internal, 108, 224
-recovered pasa_asmbl_21154.p1, internal, 365, 486
-recovered pasa_asmbl_21154.p1, internal, 588, 984
Couldn't classify 108, 224
Sorry, prediction Augustus_model.g40653.t1 fails validation.
(AGC)	 AG	108-224	GT	AGG
(AAG)	 AG	365-486	GT	CAG
(GAA)	 AG	588-984	GT	AAG
-recovered Augustus_model.g40653.t1, terminal, 588, 984
-recovered Augustus_model.g40653.t1, internal, 108, 224
-recovered Augustus_model.g40653.t1, internal, 365, 486
-recovered Augustus_model.g40653.t1, internal, 588, 984
Valid prediction for CodingQuarry_transcript_23937-T1
Couldn't classify 108, 224
Sorry, prediction GlimmerHMM_glimmerT_61337-T1 fails validation.
(AGC)	 AG	108-224	GT	AGG
(AAG)	 AG	365-486	GT	CAG
(GAA)	 AG	588-984	GT	AAG
-recovered GlimmerHMM_glimmerT_61337-T1, terminal, 588, 984
-recovered GlimmerHMM_glimmerT_61337-T1, internal, 108, 224
-recovered GlimmerHMM_glimmerT_61337-T1, internal, 365, 486
-recovered GlimmerHMM_glimmerT_61337-T1, internal, 588, 984

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1913
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support