-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_181

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_181-snap.1-T1
Valid prediction for snap_scaffold_181-snap.2-T1
Valid prediction for snap_scaffold_181-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_59965-T1
Couldn't classify 9789, 9943
Sorry, prediction GlimmerHMM_glimmerT_59966-T1 fails validation.
(ATG)	 GC	8359-8455	GT	CGG
(CAC)	 AG	9789-9943	GT	CTG
-recovered GlimmerHMM_glimmerT_59966-T1, initial, 8359, 8455
-recovered GlimmerHMM_glimmerT_59966-T1, internal, 9789, 9943
Couldn't classify 9811, 9943
Sorry, prediction Augustus_model.g39716.t1 fails validation.
(ATG)	 CC	6836-7084	GT	TGG
(ACA)	 AG	7254-7436	GT	TGG
(CTG)	 AG	8007-8131	GT	AGG
(CAT)	 AG	8358-8486	GT	CGG
(ATC)	 AG	9811-9943	GT	CTG
-recovered Augustus_model.g39716.t1, initial, 6836, 7084
-recovered Augustus_model.g39716.t1, internal, 7254, 7436
-recovered Augustus_model.g39716.t1, internal, 8007, 8131
-recovered Augustus_model.g39716.t1, internal, 8358, 8486
-recovered Augustus_model.g39716.t1, internal, 9811, 9943

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 10454
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support