-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1808

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61332-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 464, 611
Couldn't classify 1461, 1540
Sorry, prediction snap_scaffold_1808-snap.1-T1 fails validation.
(GTG)	 AG	464-611	GT	AGG
(GCT)	 AG	979-992	GT	AGG
(CTC)	 AG	1461-1540	GT	TGG
-recovered snap_scaffold_1808-snap.1-T1, internal, 464, 611
-recovered snap_scaffold_1808-snap.1-T1, internal, 979, 992
-recovered snap_scaffold_1808-snap.1-T1, internal, 1461, 1540
Valid prediction for GlimmerHMM_glimmerT_61333-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61333-T1 464-687-terminal-1 is invalid.
Valid prediction for Augustus_model.g40650.t1
add_exon() Sorry, Augustus_model.g40650.t1 464-687-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1916
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support