-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_180

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4130, 4423
Sorry, prediction Augustus_model.g39715.t1 fails validation.
(CCC)	 AG	4130-4423	GT	TGG
(CCC)	 AG	4967-5037	GA	GAG
-recovered Augustus_model.g39715.t1, terminal, 4967, 5037
-recovered Augustus_model.g39715.t1, internal, 4130, 4423
Valid prediction for GlimmerHMM_glimmerT_59964-T1
Valid prediction for snap_scaffold_180-snap.1-T1
Couldn't classify 9939, 10186
Sorry, prediction snap_scaffold_180-snap.3-T1 fails validation.
(ATG)	 CG	9311-9376	GT	CGG
(ATG)	 AG	9939-10186	GT	CAG
-recovered snap_scaffold_180-snap.3-T1, initial, 9311, 9376
-recovered snap_scaffold_180-snap.3-T1, initial, 9939, 10186
-recovered snap_scaffold_180-snap.3-T1, internal, 9939, 10186

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3483, 3733
Couldn't classify 5682, 6281
Sorry, prediction snap_scaffold_180-snap.2-T1 fails validation.
(ACA)	 AG	3483-3733	GT	AGG
(GAG)	 AG	5682-6281	GT	AGG
-recovered snap_scaffold_180-snap.2-T1, internal, 3483, 3733
-recovered snap_scaffold_180-snap.2-T1, internal, 5682, 6281

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8345, rend_intergenic: 4183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 10463
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 8345, rend_intergenic: 4183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support