-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_18/scaffold_18_943639-1115379

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_41725-T1
Valid prediction for Augustus_model.g27771.t1
Valid prediction for Augustus_model.g27765.t1
Valid prediction for GlimmerHMM_glimmerT_41707-T1
Valid prediction for snap_scaffold_18-snap.210-T1
Valid prediction for Augustus_model.g27775.t1
Valid prediction for snap_scaffold_18-snap.186-T1
Valid prediction for snap_scaffold_18-snap.203-T1
Valid prediction for snap_scaffold_18-snap.196-T1
Valid prediction for snap_scaffold_18-snap.195-T1
Valid prediction for GlimmerHMM_glimmerT_41716-T1
Valid prediction for snap_scaffold_18-snap.214-T1
Valid prediction for GlimmerHMM_glimmerT_41715-T1
Valid prediction for GlimmerHMM_glimmerT_41729-T1
Valid prediction for snap_scaffold_18-snap.194-T1
Valid prediction for snap_scaffold_18-snap.201-T1
Valid prediction for GlimmerHMM_glimmerT_41727-T1
Valid prediction for snap_scaffold_18-snap.185-T1
Valid prediction for Augustus_model.g27776.t1
Valid prediction for snap_scaffold_18-snap.207-T1
Valid prediction for snap_scaffold_18-snap.212-T1
Valid prediction for GlimmerHMM_glimmerT_41720-T1
Valid prediction for GlimmerHMM_glimmerT_41724-T1
Valid prediction for snap_scaffold_18-snap.179-T1
Valid prediction for snap_scaffold_18-snap.206-T1
Valid prediction for GlimmerHMM_glimmerT_41712-T1
Valid prediction for GlimmerHMM_glimmerT_41713-T1
Valid prediction for snap_scaffold_18-snap.192-T1
Valid prediction for snap_scaffold_18-snap.199-T1
Valid prediction for GlimmerHMM_glimmerT_41708-T1
Valid prediction for GlimmerHMM_glimmerT_41723-T1
Valid prediction for GlimmerHMM_glimmerT_41717-T1
Valid prediction for snap_scaffold_18-snap.178-T1
Valid prediction for snap_scaffold_18-snap.177-T1
Valid prediction for Augustus_model.g27766.t1
Valid prediction for snap_scaffold_18-snap.190-T1
Valid prediction for Augustus_model.g27773.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_18-snap.193-T1
Valid prediction for Augustus_model.g27774.t1
Valid prediction for Augustus_model.g27769.t1
Valid prediction for GlimmerHMM_glimmerT_41726-T1
Valid prediction for snap_scaffold_18-snap.189-T1
Valid prediction for snap_scaffold_18-snap.200-T1
Valid prediction for GlimmerHMM_glimmerT_41721-T1
Valid prediction for snap_scaffold_18-snap.209-T1
Valid prediction for GlimmerHMM_glimmerT_41722-T1
Valid prediction for snap_scaffold_18-snap.202-T1
Valid prediction for snap_scaffold_18-snap.184-T1
Valid prediction for snap_scaffold_18-snap.182-T1
Valid prediction for snap_scaffold_18-snap.191-T1
Valid prediction for snap_scaffold_18-snap.181-T1
Valid prediction for Augustus_model.g27768.t1
Valid prediction for GlimmerHMM_glimmerT_41714-T1
Valid prediction for snap_scaffold_18-snap.198-T1
Valid prediction for snap_scaffold_18-snap.205-T1
Valid prediction for snap_scaffold_18-snap.215-T1
Valid prediction for snap_scaffold_18-snap.183-T1
Valid prediction for GlimmerHMM_glimmerT_41711-T1
Valid prediction for GlimmerHMM_glimmerT_41709-T1
Valid prediction for snap_scaffold_18-snap.204-T1
Valid prediction for snap_scaffold_18-snap.197-T1
Valid prediction for GlimmerHMM_glimmerT_41728-T1
Valid prediction for GlimmerHMM_glimmerT_41719-T1
Valid prediction for snap_scaffold_18-snap.211-T1
Valid prediction for snap_scaffold_18-snap.180-T1
Valid prediction for snap_scaffold_18-snap.187-T1
Valid prediction for GlimmerHMM_glimmerT_41710-T1
Valid prediction for Augustus_model.g27767.t1
Valid prediction for snap_scaffold_18-snap.208-T1
Valid prediction for Augustus_model.g27772.t1
Valid prediction for snap_scaffold_18-snap.213-T1
Valid prediction for Augustus_model.g27770.t1
Valid prediction for snap_scaffold_18-snap.188-T1
Valid prediction for GlimmerHMM_glimmerT_41718-T1
Valid prediction for GlimmerHMM_glimmerT_41730-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 47023, rend_intergenic: 26867  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49755, rend_intergenic: 48396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64579, rend_intergenic: 51366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67565, rend_intergenic: 65019  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72026, rend_intergenic: 69274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74351, rend_intergenic: 72302  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86976, rend_intergenic: 85639  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95212, rend_intergenic: 88709  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100609, rend_intergenic: 95363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120733, rend_intergenic: 117535  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128156, rend_intergenic: 122567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139849, rend_intergenic: 135975  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141993, rend_intergenic: 140139  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143864, rend_intergenic: 142030  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147941, rend_intergenic: 143943  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158904, rend_intergenic: 148242  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161774, rend_intergenic: 159296  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171499, rend_intergenic: 166460  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 171741
-exon list size: 278


building trellis

0.4    
0.7    
1.1    
1.4    
1.8    
2.1    
2.5    
2.9    
3.2    
3.6    
3.9    
4.3    
4.6    
5.0    
5.4    
5.7    
6.1    
6.4    
6.8    
7.1    
7.5    
7.9    
8.2    
8.6    
8.9    
9.3    
9.6    
10.0    
10.4    
10.7    
11.1    
11.4    
11.8    
12.1    
12.5    
12.9    
13.2    
13.6    
13.9    
14.3    
14.6    
15.0    
15.4    
15.7    
16.1    
16.4    
16.8    
17.1    
17.5    
17.9    
18.2    
18.6    
18.9    
19.3    
19.6    
20.0    
20.4    
20.7    
21.1    
21.4    
21.8    
22.1    
22.5    
22.9    
23.2    
23.6    
23.9    
24.3    
24.6    
25.0    
25.4    
25.7    
26.1    
26.4    
26.8    
27.1    
27.5    
27.9    
28.2    
28.6    
28.9    
29.3    
29.6    
30.0    
30.4    
30.7    
31.1    
31.4    
31.8    
32.1    
32.5    
32.9    
33.2    
33.6    
33.9    
34.3    
34.6    
35.0    
35.4    
35.7    
36.1    
36.4    
36.8    
37.1    
37.5    
37.9    
38.2    
38.6    
38.9    
39.3    
39.6    
40.0    
40.4    
40.7    
41.1    
41.4    
41.8    
42.1    
42.5    
42.9    
43.2    
43.6    
43.9    
44.3    
44.6    
45.0    
45.4    
45.7    
46.1    
46.4    
46.8    
47.1    
47.5    
47.9    
48.2    
48.6    
48.9    
49.3    
49.6    
50.0    
50.4    
50.7    
51.1    
51.4    
51.8    
52.1    
52.5    
52.9    
53.2    
53.6    
53.9    
54.3    
54.6    
55.0    
55.4    
55.7    
56.1    
56.4    
56.8    
57.1    
57.5    
57.9    
58.2    
58.6    
58.9    
59.3    
59.6    
60.0    
60.4    
60.7    
61.1    
61.4    
61.8    
62.1    
62.5    
62.9    
63.2    
63.6    
63.9    
64.3    
64.6    
65.0    
65.4    
65.7    
66.1    
66.4    
66.8    
67.1    
67.5    
67.9    
68.2    
68.6    
68.9    
69.3    
69.6    
70.0    
70.4    
70.7    
71.1    
71.4    
71.8    
72.1    
72.5    
72.9    
73.2    
73.6    
73.9    
74.3    
74.6    
75.0    
75.4    
75.7    
76.1    
76.4    
76.8    
77.1    
77.5    
77.9    
78.2    
78.6    
78.9    
79.3    
79.6    
80.0    
80.4    
80.7    
81.1    
81.4    
81.8    
82.1    
82.5    
82.9    
83.2    
83.6    
83.9    
84.3    
84.6    
85.0    
85.4    
85.7    
86.1    
86.4    
86.8    
87.1    
87.5    
87.9    
88.2    
88.6    
88.9    
89.3    
89.6    
90.0    
90.4    
90.7    
91.1    
91.4    
91.8    
92.1    
92.5    
92.9    
93.2    
93.6    
93.9    
94.3    
94.6    
95.0    
95.4    
95.7    
96.1    
96.4    
96.8    
97.1    
97.5    
97.9    
98.2    
98.6    
98.9    
99.3    
99.6    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 47023, rend_intergenic: 26867  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49755, rend_intergenic: 48396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64579, rend_intergenic: 51366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67565, rend_intergenic: 65019  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72026, rend_intergenic: 69274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74351, rend_intergenic: 72302  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86976, rend_intergenic: 85639  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95212, rend_intergenic: 88709  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100609, rend_intergenic: 95363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120733, rend_intergenic: 117535  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128156, rend_intergenic: 122567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139849, rend_intergenic: 135975  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141993, rend_intergenic: 140139  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143864, rend_intergenic: 142030  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147941, rend_intergenic: 143943  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158904, rend_intergenic: 148242  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161774, rend_intergenic: 159296  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171499, rend_intergenic: 166460  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support