-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_18/scaffold_18_9299586-9475954

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g28605.t1
Valid prediction for snap_scaffold_18-snap.1993-T1
Valid prediction for snap_scaffold_18-snap.1973-T1
Valid prediction for snap_scaffold_18-snap.1984-T1
Valid prediction for Augustus_model.g28612.t1
Valid prediction for snap_scaffold_18-snap.1996-T1
Valid prediction for GlimmerHMM_glimmerT_42898-T1
Valid prediction for GlimmerHMM_glimmerT_42908-T1
Valid prediction for GlimmerHMM_glimmerT_42900-T1
Valid prediction for Augustus_model.g28608.t1
Valid prediction for GlimmerHMM_glimmerT_42906-T1
Valid prediction for snap_scaffold_18-snap.1989-T1
Valid prediction for Augustus_model.g28603.t1
Valid prediction for GlimmerHMM_glimmerT_42896-T1
Valid prediction for Augustus_model.g28606.t1
Valid prediction for GlimmerHMM_glimmerT_42913-T1
Valid prediction for snap_scaffold_18-snap.2006-T1
Valid prediction for Augustus_model.g28615.t1
Valid prediction for Augustus_model.g28609.t1
Valid prediction for snap_scaffold_18-snap.2008-T1
Valid prediction for Augustus_model.g28607.t1
Valid prediction for snap_scaffold_18-snap.1970-T1
Valid prediction for snap_scaffold_18-snap.1976-T1
Valid prediction for GlimmerHMM_glimmerT_42910-T1
Valid prediction for Augustus_model.g28611.t1
Valid prediction for snap_scaffold_18-snap.1982-T1
Valid prediction for snap_scaffold_18-snap.1968-T1
Valid prediction for snap_scaffold_18-snap.1967-T1
Valid prediction for GlimmerHMM_glimmerT_42902-T1
Valid prediction for snap_scaffold_18-snap.1975-T1
Valid prediction for Augustus_model.g28616.t1
Valid prediction for Augustus_model.g28604.t1
Valid prediction for snap_scaffold_18-snap.1985-T1
Valid prediction for snap_scaffold_18-snap.1990-T1
Valid prediction for snap_scaffold_18-snap.2000-T1
Valid prediction for snap_scaffold_18-snap.1998-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_18-snap.2004-T1
Valid prediction for snap_scaffold_18-snap.1987-T1
Valid prediction for GlimmerHMM_glimmerT_42907-T1
Valid prediction for GlimmerHMM_glimmerT_42909-T1
Valid prediction for snap_scaffold_18-snap.1997-T1
Valid prediction for snap_scaffold_18-snap.1977-T1
Sorry, intron length (3) is less than minimum required (10)
Couldn't classify 54043, 54405
Sorry, prediction pasa_asmbl_20885.p1 fails validation.
(ATG)	 CC	54043-54405	CC	AGC
Valid prediction for GlimmerHMM_glimmerT_42899-T1
Valid prediction for snap_scaffold_18-snap.1966-T1
Valid prediction for snap_scaffold_18-snap.1974-T1
Valid prediction for snap_scaffold_18-snap.1965-T1
Valid prediction for Augustus_model.g28613.t1
Valid prediction for GlimmerHMM_glimmerT_42901-T1
Valid prediction for snap_scaffold_18-snap.2002-T1
Valid prediction for GlimmerHMM_glimmerT_42895-T1
Valid prediction for snap_scaffold_18-snap.1991-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_42904-T1
Valid prediction for GlimmerHMM_glimmerT_42905-T1
Valid prediction for Augustus_model.g28602.t1
Valid prediction for Augustus_model.g28610.t1
Valid prediction for snap_scaffold_18-snap.2003-T1
Valid prediction for snap_scaffold_18-snap.1983-T1
Valid prediction for snap_scaffold_18-snap.1986-T1
Valid prediction for snap_scaffold_18-snap.1981-T1
Valid prediction for GlimmerHMM_glimmerT_42897-T1
Valid prediction for Augustus_model.g28614.t1
Valid prediction for snap_scaffold_18-snap.1972-T1
Valid prediction for snap_scaffold_18-snap.1999-T1
Valid prediction for snap_scaffold_18-snap.1979-T1
Valid prediction for snap_scaffold_18-snap.1988-T1
Valid prediction for GlimmerHMM_glimmerT_42894-T1
Valid prediction for snap_scaffold_18-snap.1995-T1
Valid prediction for snap_scaffold_18-snap.1994-T1
Valid prediction for snap_scaffold_18-snap.1992-T1
Valid prediction for snap_scaffold_18-snap.1978-T1
Valid prediction for snap_scaffold_18-snap.1969-T1
Valid prediction for GlimmerHMM_glimmerT_42912-T1
Valid prediction for snap_scaffold_18-snap.2007-T1
Valid prediction for Augustus_model.g28601.t1
Valid prediction for snap_scaffold_18-snap.2001-T1
Valid prediction for snap_scaffold_18-snap.1980-T1
Valid prediction for snap_scaffold_18-snap.2005-T1
Valid prediction for GlimmerHMM_glimmerT_42903-T1
Valid prediction for GlimmerHMM_glimmerT_42911-T1
Valid prediction for snap_scaffold_18-snap.1971-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 122358, rend_intergenic: 122355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10373, rend_intergenic: 7844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16592, rend_intergenic: 13548  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20162, rend_intergenic: 17378  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34681, rend_intergenic: 21003  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42267, rend_intergenic: 35328  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63352, rend_intergenic: 44774  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69936, rend_intergenic: 64675  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78002, rend_intergenic: 71424  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98527, rend_intergenic: 88576  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108472, rend_intergenic: 103360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120454, rend_intergenic: 114273  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122358, rend_intergenic: 120929  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128964, rend_intergenic: 127403  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134073, rend_intergenic: 131375  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136414, rend_intergenic: 134245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140564, rend_intergenic: 136822  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143264, rend_intergenic: 142093  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152639, rend_intergenic: 145531  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164662, rend_intergenic: 160844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172211, rend_intergenic: 166756  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 176369
-exon list size: 333


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.8    
2.1    
2.4    
2.7    
3.0    
3.3    
3.6    
3.9    
4.2    
4.5    
4.8    
5.1    
5.4    
5.7    
6.0    
6.3    
6.6    
6.9    
7.2    
7.5    
7.8    
8.1    
8.4    
8.7    
9.0    
9.3    
9.6    
9.9    
10.1    
10.4    
10.7    
11.0    
11.3    
11.6    
11.9    
12.2    
12.5    
12.8    
13.1    
13.4    
13.7    
14.0    
14.3    
14.6    
14.9    
15.2    
15.5    
15.8    
16.1    
16.4    
16.7    
17.0    
17.3    
17.6    
17.9    
18.2    
18.5    
18.8    
19.1    
19.4    
19.7    
20.0    
20.3    
20.6    
20.9    
21.2    
21.5    
21.8    
22.1    
22.4    
22.7    
23.0    
23.3    
23.6    
23.9    
24.2    
24.5    
24.8    
25.1    
25.4    
25.7    
26.0    
26.3    
26.6    
26.9    
27.2    
27.5    
27.8    
28.1    
28.4    
28.7    
29.0    
29.3    
29.6    
29.9    
30.1    
30.4    
30.7    
31.0    
31.3    
31.6    
31.9    
32.2    
32.5    
32.8    
33.1    
33.4    
33.7    
34.0    
34.3    
34.6    
34.9    
35.2    
35.5    
35.8    
36.1    
36.4    
36.7    
37.0    
37.3    
37.6    
37.9    
38.2    
38.5    
38.8    
39.1    
39.4    
39.7    
40.0    
40.3    
40.6    
40.9    
41.2    
41.5    
41.8    
42.1    
42.4    
42.7    
43.0    
43.3    
43.6    
43.9    
44.2    
44.5    
44.8    
45.1    
45.4    
45.7    
46.0    
46.3    
46.6    
46.9    
47.2    
47.5    
47.8    
48.1    
48.4    
48.7    
49.0    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
51.0    
51.3    
51.6    
51.9    
52.2    
52.5    
52.8    
53.1    
53.4    
53.7    
54.0    
54.3    
54.6    
54.9    
55.2    
55.5    
55.8    
56.1    
56.4    
56.7    
57.0    
57.3    
57.6    
57.9    
58.2    
58.5    
58.8    
59.1    
59.4    
59.7    
60.0    
60.3    
60.6    
60.9    
61.2    
61.5    
61.8    
62.1    
62.4    
62.7    
63.0    
63.3    
63.6    
63.9    
64.2    
64.5    
64.8    
65.1    
65.4    
65.7    
66.0    
66.3    
66.6    
66.9    
67.2    
67.5    
67.8    
68.1    
68.4    
68.7    
69.0    
69.3    
69.6    
69.9    
70.1    
70.4    
70.7    
71.0    
71.3    
71.6    
71.9    
72.2    
72.5    
72.8    
73.1    
73.4    
73.7    
74.0    
74.3    
74.6    
74.9    
75.2    
75.5    
75.8    
76.1    
76.4    
76.7    
77.0    
77.3    
77.6    
77.9    
78.2    
78.5    
78.8    
79.1    
79.4    
79.7    
80.0    
80.3    
80.6    
80.9    
81.2    
81.5    
81.8    
82.1    
82.4    
82.7    
83.0    
83.3    
83.6    
83.9    
84.2    
84.5    
84.8    
85.1    
85.4    
85.7    
86.0    
86.3    
86.6    
86.9    
87.2    
87.5    
87.8    
88.1    
88.4    
88.7    
89.0    
89.3    
89.6    
89.9    
90.1    
90.4    
90.7    
91.0    
91.3    
91.6    
91.9    
92.2    
92.5    
92.8    
93.1    
93.4    
93.7    
94.0    
94.3    
94.6    
94.9    
95.2    
95.5    
95.8    
96.1    
96.4    
96.7    
97.0    
97.3    
97.6    
97.9    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 26 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 122358, rend_intergenic: 122355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10373, rend_intergenic: 7844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16592, rend_intergenic: 13548  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20162, rend_intergenic: 17378  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34681, rend_intergenic: 21003  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42267, rend_intergenic: 35328  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63352, rend_intergenic: 44774  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69936, rend_intergenic: 64675  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78002, rend_intergenic: 71424  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98527, rend_intergenic: 88576  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108472, rend_intergenic: 103360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120454, rend_intergenic: 114273  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122358, rend_intergenic: 120929  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128964, rend_intergenic: 127403  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134073, rend_intergenic: 131375  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136414, rend_intergenic: 134245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140564, rend_intergenic: 136822  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143264, rend_intergenic: 142093  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152639, rend_intergenic: 145531  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164662, rend_intergenic: 160844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172211, rend_intergenic: 166756  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support