-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_18/scaffold_18_8951891-9094097

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_42843-T1
Valid prediction for GlimmerHMM_glimmerT_42864-T1
Valid prediction for snap_scaffold_18-snap.1890-T1
Valid prediction for GlimmerHMM_glimmerT_42846-T1
Valid prediction for GlimmerHMM_glimmerT_42862-T1
Valid prediction for snap_scaffold_18-snap.1912-T1
Valid prediction for snap_scaffold_18-snap.1895-T1
Valid prediction for Augustus_model.g28582.t1
Valid prediction for snap_scaffold_18-snap.1910-T1
Valid prediction for snap_scaffold_18-snap.1916-T1
Valid prediction for snap_scaffold_18-snap.1892-T1
Valid prediction for GlimmerHMM_glimmerT_42845-T1
Valid prediction for snap_scaffold_18-snap.1917-T1
Valid prediction for Augustus_model.g28578.t1
Valid prediction for snap_scaffold_18-snap.1896-T1
Valid prediction for snap_scaffold_18-snap.1888-T1
Valid prediction for snap_scaffold_18-snap.1900-T1
Valid prediction for GlimmerHMM_glimmerT_42859-T1
Valid prediction for snap_scaffold_18-snap.1887-T1
Valid prediction for snap_scaffold_18-snap.1908-T1
Valid prediction for snap_scaffold_18-snap.1918-T1
Valid prediction for GlimmerHMM_glimmerT_42856-T1
Valid prediction for snap_scaffold_18-snap.1921-T1
Valid prediction for GlimmerHMM_glimmerT_42849-T1
Valid prediction for snap_scaffold_18-snap.1906-T1
Valid prediction for GlimmerHMM_glimmerT_42847-T1
Valid prediction for GlimmerHMM_glimmerT_42844-T1
Valid prediction for GlimmerHMM_glimmerT_42850-T1
Valid prediction for GlimmerHMM_glimmerT_42855-T1
Valid prediction for snap_scaffold_18-snap.1902-T1
Valid prediction for GlimmerHMM_glimmerT_42853-T1
Valid prediction for snap_scaffold_18-snap.1897-T1
Valid prediction for GlimmerHMM_glimmerT_42861-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_18-snap.1914-T1
Valid prediction for snap_scaffold_18-snap.1893-T1
Valid prediction for Augustus_model.g28577.t1
Valid prediction for GlimmerHMM_glimmerT_42865-T1
Valid prediction for snap_scaffold_18-snap.1911-T1
Valid prediction for GlimmerHMM_glimmerT_42860-T1
Valid prediction for GlimmerHMM_glimmerT_42863-T1
Valid prediction for Augustus_model.g28584.t1
Valid prediction for snap_scaffold_18-snap.1913-T1
Valid prediction for snap_scaffold_18-snap.1898-T1
Valid prediction for snap_scaffold_18-snap.1915-T1
Valid prediction for Augustus_model.g28579.t1
Valid prediction for GlimmerHMM_glimmerT_42854-T1
Valid prediction for snap_scaffold_18-snap.1891-T1
Valid prediction for GlimmerHMM_glimmerT_42857-T1
Valid prediction for GlimmerHMM_glimmerT_42858-T1
Valid prediction for GlimmerHMM_glimmerT_42851-T1
Valid prediction for snap_scaffold_18-snap.1899-T1
Valid prediction for snap_scaffold_18-snap.1903-T1
Valid prediction for GlimmerHMM_glimmerT_42848-T1
Valid prediction for snap_scaffold_18-snap.1909-T1
Valid prediction for Augustus_model.g28581.t1
Valid prediction for snap_scaffold_18-snap.1889-T1
Valid prediction for snap_scaffold_18-snap.1901-T1
Valid prediction for Augustus_model.g28580.t1
Valid prediction for GlimmerHMM_glimmerT_42852-T1
Valid prediction for snap_scaffold_18-snap.1894-T1
Valid prediction for GlimmerHMM_glimmerT_42842-T1
Valid prediction for Augustus_model.g28583.t1
Valid prediction for snap_scaffold_18-snap.1919-T1
Valid prediction for GlimmerHMM_glimmerT_42840-T1
Valid prediction for GlimmerHMM_glimmerT_42841-T1
Valid prediction for snap_scaffold_18-snap.1905-T1
Valid prediction for snap_scaffold_18-snap.1904-T1
Valid prediction for snap_scaffold_18-snap.1907-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15846, rend_intergenic: 11510  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16359, rend_intergenic: 16204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18605, rend_intergenic: 16390  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26120, rend_intergenic: 22893  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31916, rend_intergenic: 29725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43729, rend_intergenic: 39339  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49363, rend_intergenic: 45027  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51828, rend_intergenic: 49380  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54567, rend_intergenic: 52065  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61298, rend_intergenic: 54766  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73044, rend_intergenic: 70507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79649, rend_intergenic: 75926  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88292, rend_intergenic: 88113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90805, rend_intergenic: 88811  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101546, rend_intergenic: 92288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114325, rend_intergenic: 102647  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138222, rend_intergenic: 117966  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 105792, rend_intergenic: 105789  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 142207
-exon list size: 241


building trellis

0.4    
0.8    
1.2    
1.6    
2.1    
2.5    
2.9    
3.3    
3.7    
4.1    
4.5    
4.9    
5.3    
5.8    
6.2    
6.6    
7.0    
7.4    
7.8    
8.2    
8.6    
9.1    
9.5    
9.9    
10.3    
10.7    
11.1    
11.5    
11.9    
12.3    
12.8    
13.2    
13.6    
14.0    
14.4    
14.8    
15.2    
15.6    
16.0    
16.5    
16.9    
17.3    
17.7    
18.1    
18.5    
18.9    
19.3    
19.8    
20.2    
20.6    
21.0    
21.4    
21.8    
22.2    
22.6    
23.0    
23.5    
23.9    
24.3    
24.7    
25.1    
25.5    
25.9    
26.3    
26.7    
27.2    
27.6    
28.0    
28.4    
28.8    
29.2    
29.6    
30.0    
30.5    
30.9    
31.3    
31.7    
32.1    
32.5    
32.9    
33.3    
33.7    
34.2    
34.6    
35.0    
35.4    
35.8    
36.2    
36.6    
37.0    
37.4    
37.9    
38.3    
38.7    
39.1    
39.5    
39.9    
40.3    
40.7    
41.2    
41.6    
42.0    
42.4    
42.8    
43.2    
43.6    
44.0    
44.4    
44.9    
45.3    
45.7    
46.1    
46.5    
46.9    
47.3    
47.7    
48.1    
48.6    
49.0    
49.4    
49.8    
50.2    
50.6    
51.0    
51.4    
51.9    
52.3    
52.7    
53.1    
53.5    
53.9    
54.3    
54.7    
55.1    
55.6    
56.0    
56.4    
56.8    
57.2    
57.6    
58.0    
58.4    
58.8    
59.3    
59.7    
60.1    
60.5    
60.9    
61.3    
61.7    
62.1    
62.6    
63.0    
63.4    
63.8    
64.2    
64.6    
65.0    
65.4    
65.8    
66.3    
66.7    
67.1    
67.5    
67.9    
68.3    
68.7    
69.1    
69.5    
70.0    
70.4    
70.8    
71.2    
71.6    
72.0    
72.4    
72.8    
73.3    
73.7    
74.1    
74.5    
74.9    
75.3    
75.7    
76.1    
76.5    
77.0    
77.4    
77.8    
78.2    
78.6    
79.0    
79.4    
79.8    
80.2    
80.7    
81.1    
81.5    
81.9    
82.3    
82.7    
83.1    
83.5    
84.0    
84.4    
84.8    
85.2    
85.6    
86.0    
86.4    
86.8    
87.2    
87.7    
88.1    
88.5    
88.9    
89.3    
89.7    
90.1    
90.5    
90.9    
91.4    
91.8    
92.2    
92.6    
93.0    
93.4    
93.8    
94.2    
94.7    
95.1    
95.5    
95.9    
96.3    
96.7    
97.1    
97.5    
97.9    
98.4    
98.8    
99.2    
99.6    
-found 23 predictions from path traversal
Error with prediction: snap lend_intergenic: 15846, rend_intergenic: 11510  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16359, rend_intergenic: 16204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18605, rend_intergenic: 16390  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26120, rend_intergenic: 22893  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31916, rend_intergenic: 29725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43729, rend_intergenic: 39339  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49363, rend_intergenic: 45027  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51828, rend_intergenic: 49380  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54567, rend_intergenic: 52065  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61298, rend_intergenic: 54766  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73044, rend_intergenic: 70507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79649, rend_intergenic: 75926  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88292, rend_intergenic: 88113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90805, rend_intergenic: 88811  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101546, rend_intergenic: 92288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114325, rend_intergenic: 102647  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138222, rend_intergenic: 117966  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 105792, rend_intergenic: 105789  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 14791
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 2 predictions from path traversal
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support