-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_18/scaffold_18_6580376-6760449

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_42521-T1
Valid prediction for GlimmerHMM_glimmerT_42547-T1
Valid prediction for snap_scaffold_18-snap.1400-T1
Valid prediction for snap_scaffold_18-snap.1395-T1
Valid prediction for GlimmerHMM_glimmerT_42519-T1
Valid prediction for snap_scaffold_18-snap.1390-T1
Valid prediction for GlimmerHMM_glimmerT_42531-T1
Valid prediction for GlimmerHMM_glimmerT_42520-T1
Valid prediction for Augustus_model.g28332.t1
Valid prediction for GlimmerHMM_glimmerT_42522-T1
Valid prediction for snap_scaffold_18-snap.1385-T1
Valid prediction for snap_scaffold_18-snap.1384-T1
Valid prediction for snap_scaffold_18-snap.1391-T1
Valid prediction for GlimmerHMM_glimmerT_42548-T1
Valid prediction for Augustus_model.g28327.t1
Valid prediction for Augustus_model.g28325.t1
Valid prediction for Augustus_model.g28328.t1
Valid prediction for snap_scaffold_18-snap.1409-T1
Valid prediction for snap_scaffold_18-snap.1393-T1
Valid prediction for snap_scaffold_18-snap.1397-T1
Valid prediction for snap_scaffold_18-snap.1407-T1
Valid prediction for Augustus_model.g28339.t1
Valid prediction for GlimmerHMM_glimmerT_42533-T1
Valid prediction for GlimmerHMM_glimmerT_42541-T1
Valid prediction for GlimmerHMM_glimmerT_42543-T1
Valid prediction for Augustus_model.g28335.t1
Valid prediction for GlimmerHMM_glimmerT_42544-T1
Valid prediction for GlimmerHMM_glimmerT_42538-T1
Valid prediction for snap_scaffold_18-snap.1378-T1
Valid prediction for snap_scaffold_18-snap.1419-T1
Valid prediction for snap_scaffold_18-snap.1403-T1
Valid prediction for GlimmerHMM_glimmerT_42524-T1
Valid prediction for Augustus_model.g28330.t1
Valid prediction for GlimmerHMM_glimmerT_42523-T1
Valid prediction for snap_scaffold_18-snap.1417-T1
Valid prediction for snap_scaffold_18-snap.1388-T1
Valid prediction for GlimmerHMM_glimmerT_42545-T1
Valid prediction for snap_scaffold_18-snap.1401-T1
Valid prediction for GlimmerHMM_glimmerT_42539-T1
Valid prediction for snap_scaffold_18-snap.1413-T1
Valid prediction for snap_scaffold_18-snap.1410-T1
Valid prediction for GlimmerHMM_glimmerT_42542-T1
Valid prediction for snap_scaffold_18-snap.1411-T1
Valid prediction for GlimmerHMM_glimmerT_42530-T1
Valid prediction for snap_scaffold_18-snap.1380-T1
Valid prediction for snap_scaffold_18-snap.1379-T1
Valid prediction for GlimmerHMM_glimmerT_42535-T1
Valid prediction for snap_scaffold_18-snap.1404-T1
Valid prediction for snap_scaffold_18-snap.1398-T1
Valid prediction for GlimmerHMM_glimmerT_42526-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g28342.t1
Valid prediction for Augustus_model.g28341.t1
Valid prediction for GlimmerHMM_glimmerT_42528-T1
Valid prediction for Augustus_model.g28344.t1
Valid prediction for snap_scaffold_18-snap.1406-T1
Valid prediction for Augustus_model.g28334.t1
Valid prediction for snap_scaffold_18-snap.1405-T1
Valid prediction for Augustus_model.g28326.t1
Valid prediction for Augustus_model.g28336.t1
Valid prediction for snap_scaffold_18-snap.1418-T1
Valid prediction for Augustus_model.g28340.t1
Valid prediction for Augustus_model.g28333.t1
Valid prediction for GlimmerHMM_glimmerT_42540-T1
Valid prediction for snap_scaffold_18-snap.1392-T1
Valid prediction for GlimmerHMM_glimmerT_42525-T1
Valid prediction for Augustus_model.g28338.t1
Valid prediction for snap_scaffold_18-snap.1414-T1
Valid prediction for snap_scaffold_18-snap.1387-T1
Valid prediction for GlimmerHMM_glimmerT_42529-T1
Valid prediction for snap_scaffold_18-snap.1396-T1
Valid prediction for Augustus_model.g28337.t1
Valid prediction for snap_scaffold_18-snap.1412-T1
Valid prediction for snap_scaffold_18-snap.1386-T1
Valid prediction for snap_scaffold_18-snap.1415-T1
Valid prediction for Augustus_model.g28331.t1
Valid prediction for snap_scaffold_18-snap.1394-T1
Valid prediction for GlimmerHMM_glimmerT_42549-T1
Valid prediction for snap_scaffold_18-snap.1408-T1
Valid prediction for GlimmerHMM_glimmerT_42534-T1
Valid prediction for Augustus_model.g28343.t1
Valid prediction for snap_scaffold_18-snap.1381-T1
Valid prediction for snap_scaffold_18-snap.1420-T1
Valid prediction for snap_scaffold_18-snap.1383-T1
Valid prediction for GlimmerHMM_glimmerT_42546-T1
Valid prediction for snap_scaffold_18-snap.1416-T1
Valid prediction for snap_scaffold_18-snap.1389-T1
Valid prediction for snap_scaffold_18-snap.1399-T1
Valid prediction for GlimmerHMM_glimmerT_42537-T1
Valid prediction for snap_scaffold_18-snap.1382-T1
Valid prediction for GlimmerHMM_glimmerT_42536-T1
Valid prediction for GlimmerHMM_glimmerT_42527-T1
Valid prediction for snap_scaffold_18-snap.1402-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g28329.t1
Valid prediction for GlimmerHMM_glimmerT_42532-T1
Valid prediction for GlimmerHMM_glimmerT_42550-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 31811, rend_intergenic: 28713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41432, rend_intergenic: 38356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52318, rend_intergenic: 50438  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54919, rend_intergenic: 52952  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70656, rend_intergenic: 62636  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74552, rend_intergenic: 73324  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77876, rend_intergenic: 74731  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80391, rend_intergenic: 78356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83869, rend_intergenic: 82680  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85888, rend_intergenic: 84153  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90941, rend_intergenic: 87539  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94960, rend_intergenic: 91297  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96773, rend_intergenic: 95377  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105500, rend_intergenic: 102363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107618, rend_intergenic: 106017  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122026, rend_intergenic: 108019  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125157, rend_intergenic: 123030  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132697, rend_intergenic: 125284  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148466, rend_intergenic: 137874  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161637, rend_intergenic: 158708  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165786, rend_intergenic: 163876  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168545, rend_intergenic: 166648  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 180074
-exon list size: 338


building trellis

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97.1    
97.4    
97.6    
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98.2    
98.5    
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99.1    
99.4    
99.7    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 31811, rend_intergenic: 28713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41432, rend_intergenic: 38356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52318, rend_intergenic: 50438  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54919, rend_intergenic: 52952  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70656, rend_intergenic: 62636  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74552, rend_intergenic: 73324  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77876, rend_intergenic: 74731  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80391, rend_intergenic: 78356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83869, rend_intergenic: 82680  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85888, rend_intergenic: 84153  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90941, rend_intergenic: 87539  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94960, rend_intergenic: 91297  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96773, rend_intergenic: 95377  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105500, rend_intergenic: 102363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107618, rend_intergenic: 106017  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122026, rend_intergenic: 108019  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125157, rend_intergenic: 123030  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132697, rend_intergenic: 125284  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148466, rend_intergenic: 137874  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161637, rend_intergenic: 158708  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165786, rend_intergenic: 163876  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168545, rend_intergenic: 166648  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 169121 - 180074
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support