-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_18/scaffold_18_5297488-5423850

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_42307-T1
Valid prediction for snap_scaffold_18-snap.1132-T1
Valid prediction for GlimmerHMM_glimmerT_42317-T1
Valid prediction for snap_scaffold_18-snap.1118-T1
Valid prediction for snap_scaffold_18-snap.1129-T1
Valid prediction for GlimmerHMM_glimmerT_42322-T1
Valid prediction for snap_scaffold_18-snap.1126-T1
Valid prediction for snap_scaffold_18-snap.1105-T1
Valid prediction for snap_scaffold_18-snap.1108-T1
Valid prediction for GlimmerHMM_glimmerT_42316-T1
Valid prediction for snap_scaffold_18-snap.1127-T1
Valid prediction for snap_scaffold_18-snap.1131-T1
Valid prediction for GlimmerHMM_glimmerT_42326-T1
Valid prediction for Augustus_model.g28184.t1
Valid prediction for snap_scaffold_18-snap.1113-T1
Valid prediction for GlimmerHMM_glimmerT_42327-T1
Valid prediction for Augustus_model.g28178.t1
Valid prediction for snap_scaffold_18-snap.1109-T1
Valid prediction for Augustus_model.g28183.t1
Valid prediction for Augustus_model.g28191.t1
Valid prediction for snap_scaffold_18-snap.1133-T1
Valid prediction for Augustus_model.g28186.t1
Valid prediction for snap_scaffold_18-snap.1128-T1
Valid prediction for snap_scaffold_18-snap.1101-T1
Valid prediction for snap_scaffold_18-snap.1115-T1
Valid prediction for GlimmerHMM_glimmerT_42306-T1
Valid prediction for snap_scaffold_18-snap.1121-T1
Valid prediction for GlimmerHMM_glimmerT_42312-T1
Valid prediction for GlimmerHMM_glimmerT_42315-T1
Valid prediction for GlimmerHMM_glimmerT_42318-T1
Valid prediction for GlimmerHMM_glimmerT_42310-T1
Valid prediction for Augustus_model.g28180.t1
Valid prediction for snap_scaffold_18-snap.1107-T1
Valid prediction for Augustus_model.g28176.t1
Valid prediction for snap_scaffold_18-snap.1123-T1
Valid prediction for Augustus_model.g28190.t1
Valid prediction for GlimmerHMM_glimmerT_42325-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_18-snap.1110-T1
Valid prediction for GlimmerHMM_glimmerT_42328-T1
Valid prediction for GlimmerHMM_glimmerT_42309-T1
Valid prediction for snap_scaffold_18-snap.1120-T1
Valid prediction for GlimmerHMM_glimmerT_42311-T1
Valid prediction for GlimmerHMM_glimmerT_42308-T1
Valid prediction for GlimmerHMM_glimmerT_42321-T1
Valid prediction for snap_scaffold_18-snap.1116-T1
Valid prediction for GlimmerHMM_glimmerT_42313-T1
Valid prediction for snap_scaffold_18-snap.1103-T1
Valid prediction for snap_scaffold_18-snap.1122-T1
Valid prediction for Augustus_model.g28185.t1
Valid prediction for Augustus_model.g28181.t1
Valid prediction for Augustus_model.g28189.t1
Valid prediction for snap_scaffold_18-snap.1111-T1
Valid prediction for Augustus_model.g28187.t1
Valid prediction for GlimmerHMM_glimmerT_42319-T1
Valid prediction for snap_scaffold_18-snap.1106-T1
Valid prediction for snap_scaffold_18-snap.1104-T1
Valid prediction for GlimmerHMM_glimmerT_42324-T1
Valid prediction for Augustus_model.g28182.t1
Valid prediction for Augustus_model.g28177.t1
Valid prediction for snap_scaffold_18-snap.1119-T1
Valid prediction for Augustus_model.g28193.t1
Valid prediction for snap_scaffold_18-snap.1124-T1
Valid prediction for snap_scaffold_18-snap.1114-T1
Valid prediction for GlimmerHMM_glimmerT_42323-T1
Valid prediction for Augustus_model.g28188.t1
Couldn't classify 64471, 65265
Sorry, prediction pasa_asmbl_19831.p1 fails validation.
(TTT)	 CG	64471-65265	AG	AAA
Valid prediction for snap_scaffold_18-snap.1117-T1
Valid prediction for snap_scaffold_18-snap.1130-T1
Valid prediction for Augustus_model.g28179.t1
Valid prediction for snap_scaffold_18-snap.1112-T1
Valid prediction for GlimmerHMM_glimmerT_42314-T1
Valid prediction for Augustus_model.g28192.t1
Valid prediction for snap_scaffold_18-snap.1125-T1
Valid prediction for snap_scaffold_18-snap.1102-T1
Valid prediction for GlimmerHMM_glimmerT_42320-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8339, rend_intergenic: 4087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33357, rend_intergenic: 27702  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36132, rend_intergenic: 33429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41428, rend_intergenic: 39189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46815, rend_intergenic: 45800  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55590, rend_intergenic: 50496  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88203, rend_intergenic: 83645  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112359, rend_intergenic: 107551  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 126363
-exon list size: 254


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.3    
2.7    
3.1    
3.5    
3.9    
4.3    
4.7    
5.1    
5.5    
5.9    
6.2    
6.6    
7.0    
7.4    
7.8    
8.2    
8.6    
9.0    
9.4    
9.8    
10.2    
10.5    
10.9    
11.3    
11.7    
12.1    
12.5    
12.9    
13.3    
13.7    
14.1    
14.5    
14.8    
15.2    
15.6    
16.0    
16.4    
16.8    
17.2    
17.6    
18.0    
18.4    
18.8    
19.1    
19.5    
19.9    
20.3    
20.7    
21.1    
21.5    
21.9    
22.3    
22.7    
23.0    
23.4    
23.8    
24.2    
24.6    
25.0    
25.4    
25.8    
26.2    
26.6    
27.0    
27.3    
27.7    
28.1    
28.5    
28.9    
29.3    
29.7    
30.1    
30.5    
30.9    
31.2    
31.6    
32.0    
32.4    
32.8    
33.2    
33.6    
34.0    
34.4    
34.8    
35.2    
35.5    
35.9    
36.3    
36.7    
37.1    
37.5    
37.9    
38.3    
38.7    
39.1    
39.5    
39.8    
40.2    
40.6    
41.0    
41.4    
41.8    
42.2    
42.6    
43.0    
43.4    
43.8    
44.1    
44.5    
44.9    
45.3    
45.7    
46.1    
46.5    
46.9    
47.3    
47.7    
48.0    
48.4    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.6    
52.0    
52.3    
52.7    
53.1    
53.5    
53.9    
54.3    
54.7    
55.1    
55.5    
55.9    
56.2    
56.6    
57.0    
57.4    
57.8    
58.2    
58.6    
59.0    
59.4    
59.8    
60.2    
60.5    
60.9    
61.3    
61.7    
62.1    
62.5    
62.9    
63.3    
63.7    
64.1    
64.5    
64.8    
65.2    
65.6    
66.0    
66.4    
66.8    
67.2    
67.6    
68.0    
68.4    
68.8    
69.1    
69.5    
69.9    
70.3    
70.7    
71.1    
71.5    
71.9    
72.3    
72.7    
73.0    
73.4    
73.8    
74.2    
74.6    
75.0    
75.4    
75.8    
76.2    
76.6    
77.0    
77.3    
77.7    
78.1    
78.5    
78.9    
79.3    
79.7    
80.1    
80.5    
80.9    
81.2    
81.6    
82.0    
82.4    
82.8    
83.2    
83.6    
84.0    
84.4    
84.8    
85.2    
85.5    
85.9    
86.3    
86.7    
87.1    
87.5    
87.9    
88.3    
88.7    
89.1    
89.5    
89.8    
90.2    
90.6    
91.0    
91.4    
91.8    
92.2    
92.6    
93.0    
93.4    
93.8    
94.1    
94.5    
94.9    
95.3    
95.7    
96.1    
96.5    
96.9    
97.3    
97.7    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 8339, rend_intergenic: 4087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33357, rend_intergenic: 27702  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36132, rend_intergenic: 33429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41428, rend_intergenic: 39189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46815, rend_intergenic: 45800  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55590, rend_intergenic: 50496  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88203, rend_intergenic: 83645  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112359, rend_intergenic: 107551  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support