-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_18/scaffold_18_5178349-5299832

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_18-snap.1068-T1
Valid prediction for snap_scaffold_18-snap.1092-T1
Valid prediction for snap_scaffold_18-snap.1075-T1
Valid prediction for snap_scaffold_18-snap.1077-T1
Valid prediction for Augustus_model.g28166.t1
Valid prediction for snap_scaffold_18-snap.1087-T1
Couldn't classify 107861, 108004
Sorry, prediction pasa_asmbl_20579.p2 fails validation.
(ACG)	 GG	107861-108004	GT	AGG
(GAG)	 AG	108375-108572	CC	AGC
-recovered pasa_asmbl_20579.p2, terminal, 108375, 108572
Valid prediction for snap_scaffold_18-snap.1094-T1
Valid prediction for snap_scaffold_18-snap.1074-T1
Valid prediction for snap_scaffold_18-snap.1071-T1
Valid prediction for snap_scaffold_18-snap.1076-T1
Valid prediction for snap_scaffold_18-snap.1097-T1
Valid prediction for GlimmerHMM_glimmerT_42295-T1
Valid prediction for snap_scaffold_18-snap.1088-T1
Valid prediction for snap_scaffold_18-snap.1084-T1
Valid prediction for GlimmerHMM_glimmerT_42302-T1
Valid prediction for Augustus_model.g28164.t1
Valid prediction for Augustus_model.g28169.t1
Valid prediction for Augustus_model.g28173.t1
Valid prediction for Augustus_model.g28168.t1
Couldn't classify 103621, 103658
Couldn't classify 107279, 107321
Sorry, prediction pasa_asmbl_20578.p2 fails validation.
(ACC)	 AC	103621-103658	GT	AGG
(ACT)	 AG	106514-106792	GT	AGG
(GAA)	 AG	107279-107321	CT	CCC
-recovered pasa_asmbl_20578.p2, internal, 106514, 106792
Valid prediction for snap_scaffold_18-snap.1096-T1
Valid prediction for GlimmerHMM_glimmerT_42300-T1
Valid prediction for snap_scaffold_18-snap.1099-T1
Valid prediction for Augustus_model.g28170.t1
Valid prediction for GlimmerHMM_glimmerT_42301-T1
Valid prediction for GlimmerHMM_glimmerT_42287-T1
Valid prediction for snap_scaffold_18-snap.1089-T1
Valid prediction for snap_scaffold_18-snap.1080-T1
Valid prediction for snap_scaffold_18-snap.1078-T1
Valid prediction for snap_scaffold_18-snap.1072-T1
Valid prediction for snap_scaffold_18-snap.1082-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_42292-T1
Valid prediction for snap_scaffold_18-snap.1070-T1
Valid prediction for GlimmerHMM_glimmerT_42304-T1
Valid prediction for snap_scaffold_18-snap.1091-T1
Valid prediction for GlimmerHMM_glimmerT_42303-T1
Valid prediction for snap_scaffold_18-snap.1066-T1
Valid prediction for snap_scaffold_18-snap.1095-T1
Valid prediction for Augustus_model.g28172.t1
Valid prediction for snap_scaffold_18-snap.1069-T1
Valid prediction for snap_scaffold_18-snap.1086-T1
Valid prediction for Augustus_model.g28162.t1
Valid prediction for Augustus_model.g28174.t1
Valid prediction for snap_scaffold_18-snap.1090-T1
Valid prediction for snap_scaffold_18-snap.1083-T1
Valid prediction for snap_scaffold_18-snap.1073-T1
Valid prediction for snap_scaffold_18-snap.1065-T1
Valid prediction for GlimmerHMM_glimmerT_42288-T1
Valid prediction for Augustus_model.g28171.t1
Valid prediction for snap_scaffold_18-snap.1098-T1
Valid prediction for Augustus_model.g28167.t1
Valid prediction for GlimmerHMM_glimmerT_42289-T1
Valid prediction for snap_scaffold_18-snap.1093-T1
Valid prediction for Augustus_model.g28163.t1
Valid prediction for snap_scaffold_18-snap.1079-T1
Valid prediction for GlimmerHMM_glimmerT_42305-T1
Valid prediction for Augustus_model.g28175.t1
Valid prediction for GlimmerHMM_glimmerT_42294-T1
Valid prediction for GlimmerHMM_glimmerT_42299-T1
Valid prediction for GlimmerHMM_glimmerT_42291-T1
Valid prediction for Augustus_model.g28165.t1
Valid prediction for snap_scaffold_18-snap.1085-T1
Valid prediction for snap_scaffold_18-snap.1067-T1
Valid prediction for GlimmerHMM_glimmerT_42296-T1
Valid prediction for GlimmerHMM_glimmerT_42290-T1
Valid prediction for GlimmerHMM_glimmerT_42298-T1
Valid prediction for GlimmerHMM_glimmerT_42293-T1
Valid prediction for snap_scaffold_18-snap.1081-T1
Valid prediction for GlimmerHMM_glimmerT_42297-T1
Valid prediction for snap_scaffold_18-snap.1100-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 20523, rend_intergenic: 18652  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82195, rend_intergenic: 80111  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91403, rend_intergenic: 85499  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94718, rend_intergenic: 92827  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98402, rend_intergenic: 96265  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104284, rend_intergenic: 99215  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114106, rend_intergenic: 112259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 121484
-exon list size: 221


building trellis

0.4    
0.9    
1.3    
1.8    
2.2    
2.7    
3.1    
3.6    
4.0    
4.5    
4.9    
5.4    
5.8    
6.3    
6.7    
7.2    
7.6    
8.1    
8.5    
9.0    
9.4    
9.9    
10.3    
10.8    
11.2    
11.7    
12.1    
12.6    
13.0    
13.5    
13.9    
14.3    
14.8    
15.2    
15.7    
16.1    
16.6    
17.0    
17.5    
17.9    
18.4    
18.8    
19.3    
19.7    
20.2    
20.6    
21.1    
21.5    
22.0    
22.4    
22.9    
23.3    
23.8    
24.2    
24.7    
25.1    
25.6    
26.0    
26.5    
26.9    
27.4    
27.8    
28.3    
28.7    
29.1    
29.6    
30.0    
30.5    
30.9    
31.4    
31.8    
32.3    
32.7    
33.2    
33.6    
34.1    
34.5    
35.0    
35.4    
35.9    
36.3    
36.8    
37.2    
37.7    
38.1    
38.6    
39.0    
39.5    
39.9    
40.4    
40.8    
41.3    
41.7    
42.2    
42.6    
43.0    
43.5    
43.9    
44.4    
44.8    
45.3    
45.7    
46.2    
46.6    
47.1    
47.5    
48.0    
48.4    
48.9    
49.3    
49.8    
50.2    
50.7    
51.1    
51.6    
52.0    
52.5    
52.9    
53.4    
53.8    
54.3    
54.7    
55.2    
55.6    
56.1    
56.5    
57.0    
57.4    
57.8    
58.3    
58.7    
59.2    
59.6    
60.1    
60.5    
61.0    
61.4    
61.9    
62.3    
62.8    
63.2    
63.7    
64.1    
64.6    
65.0    
65.5    
65.9    
66.4    
66.8    
67.3    
67.7    
68.2    
68.6    
69.1    
69.5    
70.0    
70.4    
70.9    
71.3    
71.7    
72.2    
72.6    
73.1    
73.5    
74.0    
74.4    
74.9    
75.3    
75.8    
76.2    
76.7    
77.1    
77.6    
78.0    
78.5    
78.9    
79.4    
79.8    
80.3    
80.7    
81.2    
81.6    
82.1    
82.5    
83.0    
83.4    
83.9    
84.3    
84.8    
85.2    
85.7    
86.1    
86.5    
87.0    
87.4    
87.9    
88.3    
88.8    
89.2    
89.7    
90.1    
90.6    
91.0    
91.5    
91.9    
92.4    
92.8    
93.3    
93.7    
94.2    
94.6    
95.1    
95.5    
96.0    
96.4    
96.9    
97.3    
97.8    
98.2    
98.7    
99.1    
99.6    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 20523, rend_intergenic: 18652  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82195, rend_intergenic: 80111  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91403, rend_intergenic: 85499  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94718, rend_intergenic: 92827  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98402, rend_intergenic: 96265  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104284, rend_intergenic: 99215  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114106, rend_intergenic: 112259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support