-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_18/scaffold_18_4827025-4991531

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_42238-T1
Valid prediction for pasa_asmbl_20571.p1
Valid prediction for snap_scaffold_18-snap.996-T1
Couldn't classify 22896, 23096
Couldn't classify 25149, 25194
Sorry, prediction CodingQuarry_transcript_23758-T1 fails validation.
(ATG)	 TC	22500-22616	GT	AGG
(GCA)	 AG	22733-22827	GT	AGG
(GTG)	 AG	22896-23096	CT	ACC
(CTT)	 AC	25149-25194	AG	AGA
-recovered CodingQuarry_transcript_23758-T1, initial, 22500, 22616
-recovered CodingQuarry_transcript_23758-T1, internal, 22733, 22827
Valid prediction for GlimmerHMM_glimmerT_42234-T1
Valid prediction for Augustus_model.g28130.t1
Valid prediction for snap_scaffold_18-snap.1023-T1
Valid prediction for pasa_asmbl_21139.p1
Valid prediction for snap_scaffold_18-snap.1019-T1
Valid prediction for GlimmerHMM_glimmerT_42241-T1
Valid prediction for GlimmerHMM_glimmerT_42232-T1
Valid prediction for GlimmerHMM_glimmerT_42230-T1
Valid prediction for GlimmerHMM_glimmerT_42242-T1
Valid prediction for snap_scaffold_18-snap.1004-T1
Valid prediction for GlimmerHMM_glimmerT_42240-T1
Valid prediction for snap_scaffold_18-snap.1024-T1
Valid prediction for snap_scaffold_18-snap.991-T1
Valid prediction for snap_scaffold_18-snap.1002-T1
Valid prediction for snap_scaffold_18-snap.998-T1
Valid prediction for GlimmerHMM_glimmerT_42253-T1
Valid prediction for CodingQuarry_transcript_23756-T1
Valid prediction for snap_scaffold_18-snap.995-T1
Valid prediction for GlimmerHMM_glimmerT_42246-T1
Valid prediction for snap_scaffold_18-snap.1021-T1
Valid prediction for snap_scaffold_18-snap.1006-T1
Valid prediction for GlimmerHMM_glimmerT_42245-T1
Valid prediction for snap_scaffold_18-snap.1005-T1
Valid prediction for snap_scaffold_18-snap.1017-T1
Valid prediction for GlimmerHMM_glimmerT_42251-T1
Valid prediction for GlimmerHMM_glimmerT_42231-T1
Valid prediction for snap_scaffold_18-snap.1014-T1
Valid prediction for GlimmerHMM_glimmerT_42248-T1
Valid prediction for GlimmerHMM_glimmerT_42255-T1
Valid prediction for snap_scaffold_18-snap.1008-T1
Valid prediction for snap_scaffold_18-snap.988-T1
Valid prediction for HiQ_model.g28128.t1
Valid prediction for snap_scaffold_18-snap.1010-T1
Valid prediction for pasa_asmbl_20569.p1
Valid prediction for GlimmerHMM_glimmerT_42250-T1
Valid prediction for snap_scaffold_18-snap.990-T1
Valid prediction for CodingQuarry_transcript_23757-T1
Valid prediction for Augustus_model.g28139.t1
Valid prediction for snap_scaffold_18-snap.1001-T1
Valid prediction for Augustus_model.g28137.t1
Valid prediction for snap_scaffold_18-snap.1018-T1
Valid prediction for HiQ_model.g28127.t1
Valid prediction for Augustus_model.g28135.t1
Valid prediction for GlimmerHMM_glimmerT_42236-T1
Valid prediction for snap_scaffold_18-snap.1013-T1
Valid prediction for snap_scaffold_18-snap.1015-T1
Valid prediction for HiQ_model.g28129.t1
Valid prediction for Augustus_model.g28140.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_42239-T1
Valid prediction for snap_scaffold_18-snap.1009-T1
Valid prediction for GlimmerHMM_glimmerT_42252-T1
Valid prediction for snap_scaffold_18-snap.1000-T1
Valid prediction for snap_scaffold_18-snap.1020-T1
Valid prediction for Augustus_model.g28131.t1
Valid prediction for snap_scaffold_18-snap.1016-T1
Valid prediction for GlimmerHMM_glimmerT_42235-T1
Valid prediction for snap_scaffold_18-snap.994-T1
Valid prediction for Augustus_model.g28133.t1
Valid prediction for GlimmerHMM_glimmerT_42244-T1
Valid prediction for GlimmerHMM_glimmerT_42249-T1
Valid prediction for snap_scaffold_18-snap.1007-T1
Valid prediction for GlimmerHMM_glimmerT_42229-T1
Valid prediction for snap_scaffold_18-snap.992-T1
Valid prediction for Augustus_model.g28134.t1
Valid prediction for snap_scaffold_18-snap.1011-T1
Valid prediction for Augustus_model.g28132.t1
Valid prediction for snap_scaffold_18-snap.1022-T1
Valid prediction for GlimmerHMM_glimmerT_42233-T1
Valid prediction for snap_scaffold_18-snap.1003-T1
Valid prediction for snap_scaffold_18-snap.997-T1
Valid prediction for Augustus_model.g28138.t1
Valid prediction for GlimmerHMM_glimmerT_42247-T1
Valid prediction for Augustus_model.g28136.t1
Valid prediction for GlimmerHMM_glimmerT_42243-T1
Valid prediction for snap_scaffold_18-snap.993-T1
Valid prediction for snap_scaffold_18-snap.989-T1
Valid prediction for GlimmerHMM_glimmerT_42254-T1
Valid prediction for snap_scaffold_18-snap.1012-T1
Valid prediction for GlimmerHMM_glimmerT_42237-T1
Valid prediction for snap_scaffold_18-snap.999-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 30415, rend_intergenic: 30412  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18944, rend_intergenic: 18061  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35314, rend_intergenic: 32621  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45856, rend_intergenic: 42043  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110241, rend_intergenic: 106648  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116010, rend_intergenic: 112262  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152613, rend_intergenic: 150173  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160431, rend_intergenic: 157775  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 164507
-exon list size: 245


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.4    
2.8    
3.2    
3.6    
4.0    
4.5    
4.9    
5.3    
5.7    
6.1    
6.5    
6.9    
7.3    
7.7    
8.1    
8.5    
8.9    
9.3    
9.7    
10.1    
10.5    
10.9    
11.3    
11.7    
12.1    
12.6    
13.0    
13.4    
13.8    
14.2    
14.6    
15.0    
15.4    
15.8    
16.2    
16.6    
17.0    
17.4    
17.8    
18.2    
18.6    
19.0    
19.4    
19.8    
20.2    
20.6    
21.1    
21.5    
21.9    
22.3    
22.7    
23.1    
23.5    
23.9    
24.3    
24.7    
25.1    
25.5    
25.9    
26.3    
26.7    
27.1    
27.5    
27.9    
28.3    
28.7    
29.1    
29.6    
30.0    
30.4    
30.8    
31.2    
31.6    
32.0    
32.4    
32.8    
33.2    
33.6    
34.0    
34.4    
34.8    
35.2    
35.6    
36.0    
36.4    
36.8    
37.2    
37.7    
38.1    
38.5    
38.9    
39.3    
39.7    
40.1    
40.5    
40.9    
41.3    
41.7    
42.1    
42.5    
42.9    
43.3    
43.7    
44.1    
44.5    
44.9    
45.3    
45.7    
46.2    
46.6    
47.0    
47.4    
47.8    
48.2    
48.6    
49.0    
49.4    
49.8    
50.2    
50.6    
51.0    
51.4    
51.8    
52.2    
52.6    
53.0    
53.4    
53.8    
54.3    
54.7    
55.1    
55.5    
55.9    
56.3    
56.7    
57.1    
57.5    
57.9    
58.3    
58.7    
59.1    
59.5    
59.9    
60.3    
60.7    
61.1    
61.5    
61.9    
62.3    
62.8    
63.2    
63.6    
64.0    
64.4    
64.8    
65.2    
65.6    
66.0    
66.4    
66.8    
67.2    
67.6    
68.0    
68.4    
68.8    
69.2    
69.6    
70.0    
70.4    
70.9    
71.3    
71.7    
72.1    
72.5    
72.9    
73.3    
73.7    
74.1    
74.5    
74.9    
75.3    
75.7    
76.1    
76.5    
76.9    
77.3    
77.7    
78.1    
78.5    
78.9    
79.4    
79.8    
80.2    
80.6    
81.0    
81.4    
81.8    
82.2    
82.6    
83.0    
83.4    
83.8    
84.2    
84.6    
85.0    
85.4    
85.8    
86.2    
86.6    
87.0    
87.4    
87.9    
88.3    
88.7    
89.1    
89.5    
89.9    
90.3    
90.7    
91.1    
91.5    
91.9    
92.3    
92.7    
93.1    
93.5    
93.9    
94.3    
94.7    
95.1    
95.5    
96.0    
96.4    
96.8    
97.2    
97.6    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 27 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 30415, rend_intergenic: 30412  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18944, rend_intergenic: 18061  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35314, rend_intergenic: 32621  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45856, rend_intergenic: 42043  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110241, rend_intergenic: 106648  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116010, rend_intergenic: 112262  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152613, rend_intergenic: 150173  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160431, rend_intergenic: 157775  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support