-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_18/scaffold_18_3450708-3619554

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_18-snap.718-T1
Valid prediction for snap_scaffold_18-snap.739-T1
Valid prediction for GlimmerHMM_glimmerT_42026-T1
Valid prediction for Augustus_model.g27999.t1
Valid prediction for Augustus_model.g27998.t1
Valid prediction for snap_scaffold_18-snap.732-T1
Valid prediction for GlimmerHMM_glimmerT_42031-T1
Valid prediction for GlimmerHMM_glimmerT_42023-T1
Valid prediction for CodingQuarry_transcript_23714-T1
Valid prediction for GlimmerHMM_glimmerT_42039-T1
Valid prediction for snap_scaffold_18-snap.730-T1
Valid prediction for GlimmerHMM_glimmerT_42025-T1
Valid prediction for snap_scaffold_18-snap.720-T1
Valid prediction for snap_scaffold_18-snap.735-T1
Valid prediction for Augustus_model.g27994.t1
Valid prediction for GlimmerHMM_glimmerT_42037-T1
Valid prediction for snap_scaffold_18-snap.733-T1
Valid prediction for Augustus_model.g27993.t1
Couldn't classify 144748, 144786
Sorry, prediction pasa_asmbl_20461.p1 fails validation.
(CTG)	 CG	144748-144786	GT	AGG
(TCG)	 AG	146395-146475	GT	AGG
(GTG)	 AG	147143-147244	GT	AGG
(ATC)	 AG	147427-147630	GT	AGG
(GGT)	 AG	148325-148409	GT	TGG
(GGC)	 AG	148642-148801	GT	CAG
(GTT)	 AG	149474-149699	GT	AGG
(GCT)	 AG	150728-150912	GT	GAG
(GTC)	 AG	151133-151214	GT	AGG
(GGA)	 AG	151384-151482	GT	AGG
(GTG)	 AG	151606-151702	GT	CGG
(GAA)	 AG	151788-151886	GT	AGG
(GTA)	 AG	152039-152136	GT	AGG
(CCG)	 AG	152275-152364	GT	GGG
(GAC)	 AG	153225-153361	GT	AGG
(GCT)	 AG	154060-154245	GT	GAG
(CAC)	 AG	155061-155214	GT	AGG
(GTG)	 AG	156086-156191	GT	ACG
(GAC)	 AG	156781-156886	GT	AGG
(GAG)	 AG	157020-157125	GT	AGG
(GAG)	 AG	157491-157547	AC	GAA
-recovered pasa_asmbl_20461.p1, terminal, 157491, 157547
-recovered pasa_asmbl_20461.p1, internal, 146395, 146475
-recovered pasa_asmbl_20461.p1, internal, 147143, 147244
-recovered pasa_asmbl_20461.p1, internal, 147427, 147630
-recovered pasa_asmbl_20461.p1, internal, 148325, 148409
-recovered pasa_asmbl_20461.p1, internal, 148642, 148801
-recovered pasa_asmbl_20461.p1, internal, 149474, 149699
-recovered pasa_asmbl_20461.p1, internal, 150728, 150912
-recovered pasa_asmbl_20461.p1, internal, 151133, 151214
-recovered pasa_asmbl_20461.p1, internal, 151384, 151482
-recovered pasa_asmbl_20461.p1, internal, 151606, 151702
-recovered pasa_asmbl_20461.p1, internal, 151788, 151886
-recovered pasa_asmbl_20461.p1, internal, 152039, 152136
-recovered pasa_asmbl_20461.p1, internal, 152275, 152364
-recovered pasa_asmbl_20461.p1, internal, 153225, 153361
-recovered pasa_asmbl_20461.p1, internal, 154060, 154245
-recovered pasa_asmbl_20461.p1, internal, 155061, 155214
-recovered pasa_asmbl_20461.p1, internal, 156086, 156191
-recovered pasa_asmbl_20461.p1, internal, 156781, 156886
-recovered pasa_asmbl_20461.p1, internal, 157020, 157125
Valid prediction for snap_scaffold_18-snap.729-T1
Valid prediction for GlimmerHMM_glimmerT_42040-T1
Valid prediction for snap_scaffold_18-snap.734-T1
Valid prediction for snap_scaffold_18-snap.723-T1
Valid prediction for CodingQuarry_transcript_23715-T1
Valid prediction for snap_scaffold_18-snap.737-T1
Valid prediction for snap_scaffold_18-snap.725-T1
Valid prediction for Augustus_model.g27997.t1
Valid prediction for GlimmerHMM_glimmerT_42029-T1
Valid prediction for GlimmerHMM_glimmerT_42032-T1
Valid prediction for snap_scaffold_18-snap.716-T1
Valid prediction for snap_scaffold_18-snap.709-T1
Valid prediction for GlimmerHMM_glimmerT_42042-T1
Valid prediction for HiQ_model.g28002.t1
Valid prediction for snap_scaffold_18-snap.726-T1
Valid prediction for pasa_asmbl_20453.p1
Valid prediction for snap_scaffold_18-snap.706-T1
Valid prediction for snap_scaffold_18-snap.738-T1
Valid prediction for GlimmerHMM_glimmerT_42038-T1
Valid prediction for snap_scaffold_18-snap.707-T1
Valid prediction for GlimmerHMM_glimmerT_42044-T1
Valid prediction for GlimmerHMM_glimmerT_42043-T1
Valid prediction for GlimmerHMM_glimmerT_42034-T1
Valid prediction for GlimmerHMM_glimmerT_42030-T1
Valid prediction for snap_scaffold_18-snap.727-T1
Valid prediction for snap_scaffold_18-snap.719-T1
Valid prediction for HiQ_model.g27995.t1
Valid prediction for snap_scaffold_18-snap.710-T1
Valid prediction for GlimmerHMM_glimmerT_42022-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_42024-T1
Valid prediction for snap_scaffold_18-snap.736-T1
Valid prediction for GlimmerHMM_glimmerT_42033-T1
Valid prediction for Augustus_model.g28001.t1
Valid prediction for Augustus_model.g27992.t1
Valid prediction for snap_scaffold_18-snap.715-T1
Valid prediction for GlimmerHMM_glimmerT_42041-T1
Valid prediction for snap_scaffold_18-snap.705-T1
Valid prediction for Augustus_model.g27996.t1
Valid prediction for snap_scaffold_18-snap.704-T1
Valid prediction for Augustus_model.g27991.t1
Valid prediction for snap_scaffold_18-snap.724-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for snap_scaffold_18-snap.744-T1
Valid prediction for snap_scaffold_18-snap.728-T1
Valid prediction for snap_scaffold_18-snap.708-T1
Valid prediction for GlimmerHMM_glimmerT_42035-T1
Valid prediction for snap_scaffold_18-snap.713-T1
Valid prediction for snap_scaffold_18-snap.743-T1
Valid prediction for snap_scaffold_18-snap.722-T1
Valid prediction for GlimmerHMM_glimmerT_42027-T1
Valid prediction for snap_scaffold_18-snap.740-T1
Valid prediction for snap_scaffold_18-snap.731-T1
Valid prediction for GlimmerHMM_glimmerT_42028-T1
Valid prediction for snap_scaffold_18-snap.721-T1
Valid prediction for snap_scaffold_18-snap.717-T1
Valid prediction for Augustus_model.g28000.t1
Valid prediction for snap_scaffold_18-snap.711-T1
Valid prediction for snap_scaffold_18-snap.742-T1
Valid prediction for snap_scaffold_18-snap.741-T1
Valid prediction for snap_scaffold_18-snap.714-T1
Valid prediction for snap_scaffold_18-snap.712-T1
Valid prediction for GlimmerHMM_glimmerT_42036-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 51585, rend_intergenic: 49150  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55534, rend_intergenic: 52216  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68287, rend_intergenic: 63070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96166, rend_intergenic: 87368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110476, rend_intergenic: 104969  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120146, rend_intergenic: 118291  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137802, rend_intergenic: 136844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157152, rend_intergenic: 144155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 168847
-exon list size: 327


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.8    
2.1    
2.4    
2.7    
3.0    
3.3    
3.6    
4.0    
4.3    
4.6    
4.9    
5.2    
5.5    
5.8    
6.1    
6.4    
6.7    
7.0    
7.3    
7.6    
7.9    
8.2    
8.5    
8.8    
9.1    
9.4    
9.7    
10.0    
10.3    
10.6    
10.9    
11.2    
11.6    
11.9    
12.2    
12.5    
12.8    
13.1    
13.4    
13.7    
14.0    
14.3    
14.6    
14.9    
15.2    
15.5    
15.8    
16.1    
16.4    
16.7    
17.0    
17.3    
17.6    
17.9    
18.2    
18.5    
18.8    
19.1    
19.5    
19.8    
20.1    
20.4    
20.7    
21.0    
21.3    
21.6    
21.9    
22.2    
22.5    
22.8    
23.1    
23.4    
23.7    
24.0    
24.3    
24.6    
24.9    
25.2    
25.5    
25.8    
26.1    
26.4    
26.7    
27.1    
27.4    
27.7    
28.0    
28.3    
28.6    
28.9    
29.2    
29.5    
29.8    
30.1    
30.4    
30.7    
31.0    
31.3    
31.6    
31.9    
32.2    
32.5    
32.8    
33.1    
33.4    
33.7    
34.0    
34.3    
34.7    
35.0    
35.3    
35.6    
35.9    
36.2    
36.5    
36.8    
37.1    
37.4    
37.7    
38.0    
38.3    
38.6    
38.9    
39.2    
39.5    
39.8    
40.1    
40.4    
40.7    
41.0    
41.3    
41.6    
41.9    
42.2    
42.6    
42.9    
43.2    
43.5    
43.8    
44.1    
44.4    
44.7    
45.0    
45.3    
45.6    
45.9    
46.2    
46.5    
46.8    
47.1    
47.4    
47.7    
48.0    
48.3    
48.6    
48.9    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.1    
51.4    
51.7    
52.0    
52.3    
52.6    
52.9    
53.2    
53.5    
53.8    
54.1    
54.4    
54.7    
55.0    
55.3    
55.6    
55.9    
56.2    
56.5    
56.8    
57.1    
57.4    
57.8    
58.1    
58.4    
58.7    
59.0    
59.3    
59.6    
59.9    
60.2    
60.5    
60.8    
61.1    
61.4    
61.7    
62.0    
62.3    
62.6    
62.9    
63.2    
63.5    
63.8    
64.1    
64.4    
64.7    
65.0    
65.3    
65.7    
66.0    
66.3    
66.6    
66.9    
67.2    
67.5    
67.8    
68.1    
68.4    
68.7    
69.0    
69.3    
69.6    
69.9    
70.2    
70.5    
70.8    
71.1    
71.4    
71.7    
72.0    
72.3    
72.6    
72.9    
73.3    
73.6    
73.9    
74.2    
74.5    
74.8    
75.1    
75.4    
75.7    
76.0    
76.3    
76.6    
76.9    
77.2    
77.5    
77.8    
78.1    
78.4    
78.7    
79.0    
79.3    
79.6    
79.9    
80.2    
80.5    
80.9    
81.2    
81.5    
81.8    
82.1    
82.4    
82.7    
83.0    
83.3    
83.6    
83.9    
84.2    
84.5    
84.8    
85.1    
85.4    
85.7    
86.0    
86.3    
86.6    
86.9    
87.2    
87.5    
87.8    
88.1    
88.4    
88.8    
89.1    
89.4    
89.7    
90.0    
90.3    
90.6    
90.9    
91.2    
91.5    
91.8    
92.1    
92.4    
92.7    
93.0    
93.3    
93.6    
93.9    
94.2    
94.5    
94.8    
95.1    
95.4    
95.7    
96.0    
96.4    
96.7    
97.0    
97.3    
97.6    
97.9    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 51585, rend_intergenic: 49150  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55534, rend_intergenic: 52216  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68287, rend_intergenic: 63070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96166, rend_intergenic: 87368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110476, rend_intergenic: 104969  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120146, rend_intergenic: 118291  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137802, rend_intergenic: 136844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157152, rend_intergenic: 144155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support