-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_18/scaffold_18_3274900-3456346

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_18-snap.694-T1
Valid prediction for Augustus_model.g27981.t1
Valid prediction for GlimmerHMM_glimmerT_42011-T1
Valid prediction for snap_scaffold_18-snap.702-T1
Valid prediction for snap_scaffold_18-snap.659-T1
Valid prediction for GlimmerHMM_glimmerT_42014-T1
Valid prediction for snap_scaffold_18-snap.684-T1
Valid prediction for snap_scaffold_18-snap.680-T1
Valid prediction for Augustus_model.g27985.t1
Valid prediction for snap_scaffold_18-snap.665-T1
Valid prediction for snap_scaffold_18-snap.696-T1
Valid prediction for GlimmerHMM_glimmerT_42002-T1
Valid prediction for snap_scaffold_18-snap.693-T1
Valid prediction for Augustus_model.g27982.t1
Valid prediction for GlimmerHMM_glimmerT_42016-T1
Valid prediction for GlimmerHMM_glimmerT_42012-T1
Valid prediction for snap_scaffold_18-snap.690-T1
Valid prediction for snap_scaffold_18-snap.700-T1
Valid prediction for snap_scaffold_18-snap.677-T1
Valid prediction for snap_scaffold_18-snap.703-T1
Valid prediction for snap_scaffold_18-snap.686-T1
Valid prediction for GlimmerHMM_glimmerT_42020-T1
Valid prediction for snap_scaffold_18-snap.675-T1
Valid prediction for Augustus_model.g27988.t1
Valid prediction for snap_scaffold_18-snap.691-T1
Valid prediction for snap_scaffold_18-snap.661-T1
Valid prediction for snap_scaffold_18-snap.679-T1
Valid prediction for Augustus_model.g27989.t1
Valid prediction for snap_scaffold_18-snap.698-T1
Valid prediction for snap_scaffold_18-snap.688-T1
Valid prediction for GlimmerHMM_glimmerT_42008-T1
Valid prediction for snap_scaffold_18-snap.674-T1
Valid prediction for GlimmerHMM_glimmerT_42013-T1
Valid prediction for snap_scaffold_18-snap.671-T1
Valid prediction for snap_scaffold_18-snap.667-T1
Valid prediction for GlimmerHMM_glimmerT_42006-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_18-snap.697-T1
Valid prediction for snap_scaffold_18-snap.673-T1
Valid prediction for snap_scaffold_18-snap.685-T1
Valid prediction for Augustus_model.g27978.t1
Valid prediction for snap_scaffold_18-snap.662-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_42019-T1
Valid prediction for GlimmerHMM_glimmerT_42001-T1
Valid prediction for Augustus_model.g27977.t1
Valid prediction for snap_scaffold_18-snap.704-T1
Valid prediction for snap_scaffold_18-snap.692-T1
Valid prediction for snap_scaffold_18-snap.663-T1
Valid prediction for Augustus_model.g27979.t1
Valid prediction for Augustus_model.g27980.t1
Valid prediction for Augustus_model.g27987.t1
Valid prediction for snap_scaffold_18-snap.695-T1
Valid prediction for Augustus_model.g27975.t1
Valid prediction for Augustus_model.g27986.t1
Valid prediction for snap_scaffold_18-snap.681-T1
Valid prediction for snap_scaffold_18-snap.689-T1
Valid prediction for GlimmerHMM_glimmerT_42010-T1
Valid prediction for GlimmerHMM_glimmerT_42017-T1
Valid prediction for GlimmerHMM_glimmerT_42003-T1
Valid prediction for GlimmerHMM_glimmerT_42021-T1
Valid prediction for GlimmerHMM_glimmerT_42009-T1
Valid prediction for snap_scaffold_18-snap.669-T1
Valid prediction for snap_scaffold_18-snap.683-T1
Valid prediction for GlimmerHMM_glimmerT_42005-T1
Valid prediction for snap_scaffold_18-snap.701-T1
Valid prediction for snap_scaffold_18-snap.682-T1
Valid prediction for GlimmerHMM_glimmerT_42018-T1
Valid prediction for snap_scaffold_18-snap.687-T1
Valid prediction for snap_scaffold_18-snap.699-T1
Valid prediction for snap_scaffold_18-snap.668-T1
Valid prediction for Augustus_model.g27984.t1
Valid prediction for snap_scaffold_18-snap.672-T1
Valid prediction for Augustus_model.g27990.t1
Valid prediction for snap_scaffold_18-snap.666-T1
Valid prediction for snap_scaffold_18-snap.676-T1
Valid prediction for snap_scaffold_18-snap.664-T1
Valid prediction for snap_scaffold_18-snap.670-T1
Valid prediction for GlimmerHMM_glimmerT_42015-T1
Valid prediction for Augustus_model.g27976.t1
Valid prediction for GlimmerHMM_glimmerT_42007-T1
Valid prediction for snap_scaffold_18-snap.660-T1
Valid prediction for GlimmerHMM_glimmerT_42004-T1
Valid prediction for snap_scaffold_18-snap.678-T1
Valid prediction for Augustus_model.g27983.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6942, rend_intergenic: 6649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10871, rend_intergenic: 7520  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12229, rend_intergenic: 11060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21618, rend_intergenic: 19503  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24971, rend_intergenic: 21720  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32218, rend_intergenic: 25695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45276, rend_intergenic: 42939  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80538, rend_intergenic: 79642  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93650, rend_intergenic: 86533  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103354, rend_intergenic: 99462  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115363, rend_intergenic: 111170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127706, rend_intergenic: 119255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136729, rend_intergenic: 135092  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142448, rend_intergenic: 137527  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150086, rend_intergenic: 147708  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170115, rend_intergenic: 169015  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172128, rend_intergenic: 170440  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176540, rend_intergenic: 172408  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 181447
-exon list size: 293


building trellis

0.3    
0.7    
1.0    
1.4    
1.7    
2.0    
2.4    
2.7    
3.1    
3.4    
3.7    
4.1    
4.4    
4.7    
5.1    
5.4    
5.8    
6.1    
6.4    
6.8    
7.1    
7.5    
7.8    
8.1    
8.5    
8.8    
9.2    
9.5    
9.8    
10.2    
10.5    
10.8    
11.2    
11.5    
11.9    
12.2    
12.5    
12.9    
13.2    
13.6    
13.9    
14.2    
14.6    
14.9    
15.3    
15.6    
15.9    
16.3    
16.6    
16.9    
17.3    
17.6    
18.0    
18.3    
18.6    
19.0    
19.3    
19.7    
20.0    
20.3    
20.7    
21.0    
21.4    
21.7    
22.0    
22.4    
22.7    
23.1    
23.4    
23.7    
24.1    
24.4    
24.7    
25.1    
25.4    
25.8    
26.1    
26.4    
26.8    
27.1    
27.5    
27.8    
28.1    
28.5    
28.8    
29.2    
29.5    
29.8    
30.2    
30.5    
30.8    
31.2    
31.5    
31.9    
32.2    
32.5    
32.9    
33.2    
33.6    
33.9    
34.2    
34.6    
34.9    
35.3    
35.6    
35.9    
36.3    
36.6    
36.9    
37.3    
37.6    
38.0    
38.3    
38.6    
39.0    
39.3    
39.7    
40.0    
40.3    
40.7    
41.0    
41.4    
41.7    
42.0    
42.4    
42.7    
43.1    
43.4    
43.7    
44.1    
44.4    
44.7    
45.1    
45.4    
45.8    
46.1    
46.4    
46.8    
47.1    
47.5    
47.8    
48.1    
48.5    
48.8    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.2    
51.5    
51.9    
52.2    
52.5    
52.9    
53.2    
53.6    
53.9    
54.2    
54.6    
54.9    
55.3    
55.6    
55.9    
56.3    
56.6    
56.9    
57.3    
57.6    
58.0    
58.3    
58.6    
59.0    
59.3    
59.7    
60.0    
60.3    
60.7    
61.0    
61.4    
61.7    
62.0    
62.4    
62.7    
63.1    
63.4    
63.7    
64.1    
64.4    
64.7    
65.1    
65.4    
65.8    
66.1    
66.4    
66.8    
67.1    
67.5    
67.8    
68.1    
68.5    
68.8    
69.2    
69.5    
69.8    
70.2    
70.5    
70.8    
71.2    
71.5    
71.9    
72.2    
72.5    
72.9    
73.2    
73.6    
73.9    
74.2    
74.6    
74.9    
75.3    
75.6    
75.9    
76.3    
76.6    
76.9    
77.3    
77.6    
78.0    
78.3    
78.6    
79.0    
79.3    
79.7    
80.0    
80.3    
80.7    
81.0    
81.4    
81.7    
82.0    
82.4    
82.7    
83.1    
83.4    
83.7    
84.1    
84.4    
84.7    
85.1    
85.4    
85.8    
86.1    
86.4    
86.8    
87.1    
87.5    
87.8    
88.1    
88.5    
88.8    
89.2    
89.5    
89.8    
90.2    
90.5    
90.8    
91.2    
91.5    
91.9    
92.2    
92.5    
92.9    
93.2    
93.6    
93.9    
94.2    
94.6    
94.9    
95.3    
95.6    
95.9    
96.3    
96.6    
96.9    
97.3    
97.6    
98.0    
98.3    
98.6    
99.0    
99.3    
99.7    
-found 33 predictions from path traversal
Error with prediction: snap lend_intergenic: 6942, rend_intergenic: 6649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10871, rend_intergenic: 7520  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12229, rend_intergenic: 11060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21618, rend_intergenic: 19503  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24971, rend_intergenic: 21720  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32218, rend_intergenic: 25695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45276, rend_intergenic: 42939  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80538, rend_intergenic: 79642  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93650, rend_intergenic: 86533  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103354, rend_intergenic: 99462  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115363, rend_intergenic: 111170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127706, rend_intergenic: 119255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136729, rend_intergenic: 135092  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142448, rend_intergenic: 137527  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150086, rend_intergenic: 147708  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170115, rend_intergenic: 169015  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172128, rend_intergenic: 170440  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176540, rend_intergenic: 172408  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10088
-exon list size: 8


building trellis

10.0    
20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support