-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_18/scaffold_18_13433037-13564143

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_43380-T1
Valid prediction for snap_scaffold_18-snap.2847-T1
Valid prediction for pasa_asmbl_21017.p1
Valid prediction for snap_scaffold_18-snap.2839-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for pasa_asmbl_21023.p1
Valid prediction for snap_scaffold_18-snap.2836-T1
Valid prediction for HiQ_model.g28863.t1
Valid prediction for GlimmerHMM_glimmerT_43376-T1
Valid prediction for HiQ_model.g28864.t1
Couldn't classify 17106, 17249
Couldn't classify 27401, 27661
Sorry, prediction pasa_asmbl_21018.p1 fails validation.
(GTG)	 GT	17106-17249	GT	AGG
(TGT)	 AG	18727-18900	GT	AGG
(ACC)	 AG	20224-20382	GT	AGG
(GTG)	 AG	21353-21577	GT	AGG
(TAT)	 AG	21724-21807	GT	AGG
(ATG)	 AG	22378-22472	GT	GTG
(ATT)	 AG	22607-22795	GT	GGG
(GCG)	 AG	23552-23643	GT	TAG
(GCG)	 AG	24067-24327	GT	TGG
(ACC)	 AG	24673-24743	GT	ATG
(GAC)	 AG	24989-25104	GT	TGG
(GTA)	 AG	25801-25950	GT	AGG
(AGA)	 AG	26669-26772	GT	CTG
(ATA)	 AG	27129-27217	GT	TGG
(TCC)	 AG	27401-27661	GA	AGG
-recovered pasa_asmbl_21018.p1, initial, 22378, 22472
-recovered pasa_asmbl_21018.p1, internal, 18727, 18900
-recovered pasa_asmbl_21018.p1, internal, 20224, 20382
-recovered pasa_asmbl_21018.p1, internal, 21353, 21577
-recovered pasa_asmbl_21018.p1, internal, 21724, 21807
-recovered pasa_asmbl_21018.p1, internal, 22378, 22472
-recovered pasa_asmbl_21018.p1, internal, 22607, 22795
-recovered pasa_asmbl_21018.p1, internal, 23552, 23643
-recovered pasa_asmbl_21018.p1, internal, 24067, 24327
-recovered pasa_asmbl_21018.p1, internal, 24673, 24743
-recovered pasa_asmbl_21018.p1, internal, 24989, 25104
-recovered pasa_asmbl_21018.p1, internal, 25801, 25950
-recovered pasa_asmbl_21018.p1, internal, 26669, 26772
-recovered pasa_asmbl_21018.p1, internal, 27129, 27217
Valid prediction for snap_scaffold_18-snap.2853-T1
Valid prediction for snap_scaffold_18-snap.2860-T1
Valid prediction for CodingQuarry_transcript_23926-T1
Valid prediction for snap_scaffold_18-snap.2855-T1
Couldn't classify 55529, 55693
Sorry, prediction pasa_asmbl_21050.p1 fails validation.
(GTC)	 AG	55529-55693	GT	AGG
(GGG)	 AG	55941-56096	GT	AGG
(GAG)	 AG	56907-56996	CA	AAC
-recovered pasa_asmbl_21050.p1, terminal, 56907, 56996
-recovered pasa_asmbl_21050.p1, internal, 55529, 55693
-recovered pasa_asmbl_21050.p1, internal, 55941, 56096
Valid prediction for snap_scaffold_18-snap.2842-T1
Valid prediction for GlimmerHMM_glimmerT_43393-T1
Valid prediction for GlimmerHMM_glimmerT_43378-T1
Valid prediction for snap_scaffold_18-snap.2851-T1
Valid prediction for snap_scaffold_18-snap.2848-T1
Valid prediction for Augustus_model.g28870.t1
Valid prediction for snap_scaffold_18-snap.2846-T1
Valid prediction for snap_scaffold_18-snap.2857-T1
Valid prediction for GlimmerHMM_glimmerT_43388-T1
Valid prediction for GlimmerHMM_glimmerT_43392-T1
Valid prediction for snap_scaffold_18-snap.2843-T1
Couldn't classify 129281, 129340
Couldn't classify 129756, 129821
Sorry, prediction CodingQuarry_transcript_23930-T1 fails validation.
(ATG)	 CC	129281-129340	CT	GCC
(CTC)	 GC	129756-129821	CA	GAC
Valid prediction for Augustus_model.g28866.t1
Valid prediction for snap_scaffold_18-snap.2859-T1
Valid prediction for GlimmerHMM_glimmerT_43382-T1
Valid prediction for HiQ_model.g28862.t1
Valid prediction for CodingQuarry_transcript_23927-T1
Valid prediction for snap_scaffold_18-snap.2838-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_43385-T1
Valid prediction for snap_scaffold_18-snap.2856-T1
Valid prediction for GlimmerHMM_glimmerT_43391-T1
Valid prediction for Augustus_model.g28867.t1
Couldn't classify 83601, 84075
Couldn't classify 84520, 84560
Sorry, prediction CodingQuarry_transcript_23928-T1 fails validation.
(ATG)	 CC	83601-84075	AG	GGA
(TGG)	 GG	84520-84560	CA	AGC
Valid prediction for CodingQuarry_transcript_23929-T1
Valid prediction for snap_scaffold_18-snap.2858-T1
Valid prediction for snap_scaffold_18-snap.2845-T1
Valid prediction for snap_scaffold_18-snap.2844-T1
Valid prediction for Augustus_model.g28868.t1
Valid prediction for GlimmerHMM_glimmerT_43387-T1
Valid prediction for pasa_asmbl_20176.p1
Valid prediction for GlimmerHMM_glimmerT_43390-T1
Valid prediction for snap_scaffold_18-snap.2837-T1
Valid prediction for GlimmerHMM_glimmerT_43383-T1
Valid prediction for snap_scaffold_18-snap.2849-T1
Valid prediction for GlimmerHMM_glimmerT_43381-T1
Valid prediction for Augustus_model.g28871.t1
Valid prediction for snap_scaffold_18-snap.2841-T1
Valid prediction for snap_scaffold_18-snap.2852-T1
Valid prediction for GlimmerHMM_glimmerT_43384-T1
Valid prediction for snap_scaffold_18-snap.2854-T1
Valid prediction for GlimmerHMM_glimmerT_43379-T1
Valid prediction for snap_scaffold_18-snap.2850-T1
Valid prediction for GlimmerHMM_glimmerT_43389-T1
Valid prediction for snap_scaffold_18-snap.2840-T1
Valid prediction for GlimmerHMM_glimmerT_43377-T1
Valid prediction for snap_scaffold_18-snap.2861-T1
Valid prediction for GlimmerHMM_glimmerT_43386-T1
Valid prediction for HiQ_model.g28865.t1
Valid prediction for Augustus_model.g28869.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9236, rend_intergenic: 6173  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12167, rend_intergenic: 9343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21861, rend_intergenic: 12328  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27762, rend_intergenic: 22378  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42555, rend_intergenic: 32288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47507, rend_intergenic: 46153  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58390, rend_intergenic: 55028  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63147, rend_intergenic: 62268  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68608, rend_intergenic: 65099  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72530, rend_intergenic: 68612  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83668, rend_intergenic: 76354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98064, rend_intergenic: 85189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119263, rend_intergenic: 98516  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129829, rend_intergenic: 120703  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 131107
-exon list size: 267


building trellis

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37.5    
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38.7    
39.0    
39.4    
39.8    
40.1    
40.5    
40.9    
41.3    
41.6    
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42.4    
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44.6    
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46.5    
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47.2    
47.6    
48.0    
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51.3    
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52.0    
52.4    
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54.3    
54.6    
55.0    
55.4    
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56.5    
56.9    
57.2    
57.6    
58.0    
58.4    
58.7    
59.1    
59.5    
59.9    
60.2    
60.6    
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61.3    
61.7    
62.1    
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63.9    
64.3    
64.7    
65.1    
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68.0    
68.4    
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69.1    
69.5    
69.9    
70.3    
70.6    
71.0    
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71.7    
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72.5    
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73.2    
73.6    
74.0    
74.3    
74.7    
75.1    
75.5    
75.8    
76.2    
76.6    
77.0    
77.3    
77.7    
78.1    
78.4    
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79.6    
79.9    
80.3    
80.7    
81.0    
81.4    
81.8    
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83.3    
83.6    
84.0    
84.4    
84.8    
85.1    
85.5    
85.9    
86.2    
86.6    
87.0    
87.4    
87.7    
88.1    
88.5    
88.8    
89.2    
89.6    
90.0    
90.3    
90.7    
91.1    
91.4    
91.8    
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96.3    
96.7    
97.0    
97.4    
97.8    
98.1    
98.5    
98.9    
99.3    
99.6    
-found 19 predictions from path traversal
Error with prediction: snap lend_intergenic: 9236, rend_intergenic: 6173  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12167, rend_intergenic: 9343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21861, rend_intergenic: 12328  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27762, rend_intergenic: 22378  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42555, rend_intergenic: 32288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47507, rend_intergenic: 46153  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58390, rend_intergenic: 55028  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63147, rend_intergenic: 62268  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68608, rend_intergenic: 65099  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72530, rend_intergenic: 68612  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83668, rend_intergenic: 76354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98064, rend_intergenic: 85189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119263, rend_intergenic: 98516  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129829, rend_intergenic: 120703  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support