-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_18/scaffold_18_12070021-12232893

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_18-snap.2593-T1
Valid prediction for snap_scaffold_18-snap.2575-T1
Valid prediction for snap_scaffold_18-snap.2577-T1
Valid prediction for snap_scaffold_18-snap.2604-T1
Valid prediction for snap_scaffold_18-snap.2586-T1
Valid prediction for snap_scaffold_18-snap.2608-T1
Valid prediction for GlimmerHMM_glimmerT_43218-T1
Valid prediction for snap_scaffold_18-snap.2592-T1
Valid prediction for snap_scaffold_18-snap.2582-T1
Valid prediction for snap_scaffold_18-snap.2596-T1
Valid prediction for GlimmerHMM_glimmerT_43220-T1
Valid prediction for snap_scaffold_18-snap.2607-T1
Valid prediction for snap_scaffold_18-snap.2599-T1
Valid prediction for snap_scaffold_18-snap.2573-T1
Valid prediction for snap_scaffold_18-snap.2581-T1
Valid prediction for snap_scaffold_18-snap.2601-T1
Valid prediction for snap_scaffold_18-snap.2584-T1
Valid prediction for snap_scaffold_18-snap.2570-T1
Valid prediction for snap_scaffold_18-snap.2588-T1
Valid prediction for snap_scaffold_18-snap.2605-T1
Valid prediction for GlimmerHMM_glimmerT_43222-T1
Valid prediction for GlimmerHMM_glimmerT_43209-T1
Valid prediction for snap_scaffold_18-snap.2603-T1
Valid prediction for GlimmerHMM_glimmerT_43223-T1
Valid prediction for snap_scaffold_18-snap.2598-T1
Valid prediction for GlimmerHMM_glimmerT_43225-T1
Valid prediction for GlimmerHMM_glimmerT_43210-T1
Valid prediction for GlimmerHMM_glimmerT_43204-T1
Valid prediction for GlimmerHMM_glimmerT_43205-T1
Valid prediction for Augustus_model.g28786.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_18-snap.2594-T1
Valid prediction for GlimmerHMM_glimmerT_43224-T1
Valid prediction for snap_scaffold_18-snap.2585-T1
Valid prediction for Augustus_model.g28785.t1
Valid prediction for snap_scaffold_18-snap.2587-T1
Valid prediction for GlimmerHMM_glimmerT_43213-T1
Valid prediction for snap_scaffold_18-snap.2583-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_43216-T1
Valid prediction for snap_scaffold_18-snap.2589-T1
Couldn't classify 104736, 104849
Couldn't classify 106638, 106844
Sorry, prediction pasa_asmbl_20140.p1 fails validation.
(AAA)	 AG	104736-104849	GT	ACG
(GAT)	 AG	106638-106844	AG	TGA
-recovered pasa_asmbl_20140.p1, internal, 104736, 104849
Valid prediction for GlimmerHMM_glimmerT_43211-T1
Valid prediction for GlimmerHMM_glimmerT_43215-T1
Valid prediction for snap_scaffold_18-snap.2602-T1
Valid prediction for GlimmerHMM_glimmerT_43219-T1
Valid prediction for snap_scaffold_18-snap.2590-T1
Valid prediction for snap_scaffold_18-snap.2595-T1
Valid prediction for snap_scaffold_18-snap.2580-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_18-snap.2591-T1
Valid prediction for Augustus_model.g28783.t1
Valid prediction for snap_scaffold_18-snap.2576-T1
Valid prediction for snap_scaffold_18-snap.2606-T1
Valid prediction for GlimmerHMM_glimmerT_43221-T1
Valid prediction for snap_scaffold_18-snap.2609-T1
Valid prediction for Augustus_model.g28782.t1
Valid prediction for snap_scaffold_18-snap.2578-T1
Valid prediction for GlimmerHMM_glimmerT_43206-T1
Valid prediction for snap_scaffold_18-snap.2610-T1
Valid prediction for snap_scaffold_18-snap.2579-T1
Valid prediction for GlimmerHMM_glimmerT_43217-T1
Valid prediction for snap_scaffold_18-snap.2600-T1
Valid prediction for GlimmerHMM_glimmerT_43214-T1
Valid prediction for Augustus_model.g28787.t1
Valid prediction for snap_scaffold_18-snap.2597-T1
Valid prediction for snap_scaffold_18-snap.2569-T1
Valid prediction for snap_scaffold_18-snap.2572-T1
Valid prediction for snap_scaffold_18-snap.2574-T1
Valid prediction for GlimmerHMM_glimmerT_43207-T1
Valid prediction for GlimmerHMM_glimmerT_43208-T1
Valid prediction for GlimmerHMM_glimmerT_43212-T1
Valid prediction for snap_scaffold_18-snap.2571-T1
Valid prediction for Augustus_model.g28784.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5859, rend_intergenic: 3906  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14615, rend_intergenic: 12882  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18571, rend_intergenic: 14851  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18621, rend_intergenic: 18620  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27603, rend_intergenic: 18682  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32481, rend_intergenic: 28155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39602, rend_intergenic: 36529  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44673, rend_intergenic: 39840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47243, rend_intergenic: 45548  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52892, rend_intergenic: 47394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56362, rend_intergenic: 53742  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60896, rend_intergenic: 56649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80608, rend_intergenic: 74600  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83695, rend_intergenic: 80870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96394, rend_intergenic: 89031  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105162, rend_intergenic: 101426  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120858, rend_intergenic: 112254  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130681, rend_intergenic: 122870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134920, rend_intergenic: 134424  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148142, rend_intergenic: 135196  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154161, rend_intergenic: 148698  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 136673, rend_intergenic: 136670  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 162873
-exon list size: 252


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.4    
2.8    
3.1    
3.5    
3.9    
4.3    
4.7    
5.1    
5.5    
5.9    
6.3    
6.7    
7.1    
7.5    
7.9    
8.3    
8.7    
9.1    
9.4    
9.8    
10.2    
10.6    
11.0    
11.4    
11.8    
12.2    
12.6    
13.0    
13.4    
13.8    
14.2    
14.6    
15.0    
15.4    
15.7    
16.1    
16.5    
16.9    
17.3    
17.7    
18.1    
18.5    
18.9    
19.3    
19.7    
20.1    
20.5    
20.9    
21.3    
21.7    
22.0    
22.4    
22.8    
23.2    
23.6    
24.0    
24.4    
24.8    
25.2    
25.6    
26.0    
26.4    
26.8    
27.2    
27.6    
28.0    
28.3    
28.7    
29.1    
29.5    
29.9    
30.3    
30.7    
31.1    
31.5    
31.9    
32.3    
32.7    
33.1    
33.5    
33.9    
34.3    
34.6    
35.0    
35.4    
35.8    
36.2    
36.6    
37.0    
37.4    
37.8    
38.2    
38.6    
39.0    
39.4    
39.8    
40.2    
40.6    
40.9    
41.3    
41.7    
42.1    
42.5    
42.9    
43.3    
43.7    
44.1    
44.5    
44.9    
45.3    
45.7    
46.1    
46.5    
46.9    
47.2    
47.6    
48.0    
48.4    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.6    
52.0    
52.4    
52.8    
53.1    
53.5    
53.9    
54.3    
54.7    
55.1    
55.5    
55.9    
56.3    
56.7    
57.1    
57.5    
57.9    
58.3    
58.7    
59.1    
59.4    
59.8    
60.2    
60.6    
61.0    
61.4    
61.8    
62.2    
62.6    
63.0    
63.4    
63.8    
64.2    
64.6    
65.0    
65.4    
65.7    
66.1    
66.5    
66.9    
67.3    
67.7    
68.1    
68.5    
68.9    
69.3    
69.7    
70.1    
70.5    
70.9    
71.3    
71.7    
72.0    
72.4    
72.8    
73.2    
73.6    
74.0    
74.4    
74.8    
75.2    
75.6    
76.0    
76.4    
76.8    
77.2    
77.6    
78.0    
78.3    
78.7    
79.1    
79.5    
79.9    
80.3    
80.7    
81.1    
81.5    
81.9    
82.3    
82.7    
83.1    
83.5    
83.9    
84.3    
84.6    
85.0    
85.4    
85.8    
86.2    
86.6    
87.0    
87.4    
87.8    
88.2    
88.6    
89.0    
89.4    
89.8    
90.2    
90.6    
90.9    
91.3    
91.7    
92.1    
92.5    
92.9    
93.3    
93.7    
94.1    
94.5    
94.9    
95.3    
95.7    
96.1    
96.5    
96.9    
97.2    
97.6    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 5859, rend_intergenic: 3906  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14615, rend_intergenic: 12882  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18571, rend_intergenic: 14851  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18621, rend_intergenic: 18620  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27603, rend_intergenic: 18682  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32481, rend_intergenic: 28155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39602, rend_intergenic: 36529  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44673, rend_intergenic: 39840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47243, rend_intergenic: 45548  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52892, rend_intergenic: 47394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56362, rend_intergenic: 53742  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60896, rend_intergenic: 56649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80608, rend_intergenic: 74600  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83695, rend_intergenic: 80870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96394, rend_intergenic: 89031  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105162, rend_intergenic: 101426  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120858, rend_intergenic: 112254  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130681, rend_intergenic: 122870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134920, rend_intergenic: 134424  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148142, rend_intergenic: 135196  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154161, rend_intergenic: 148698  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 136673, rend_intergenic: 136670  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support