-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_18/scaffold_18_11666642-11881884

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_18-snap.2511-T1
Valid prediction for Augustus_model.g28769.t1
Valid prediction for snap_scaffold_18-snap.2525-T1
Valid prediction for snap_scaffold_18-snap.2500-T1
Valid prediction for snap_scaffold_18-snap.2503-T1
Valid prediction for snap_scaffold_18-snap.2512-T1
Valid prediction for Augustus_model.g28765.t1
Valid prediction for GlimmerHMM_glimmerT_43181-T1
Valid prediction for snap_scaffold_18-snap.2505-T1
Valid prediction for snap_scaffold_18-snap.2498-T1
Valid prediction for snap_scaffold_18-snap.2492-T1
Valid prediction for GlimmerHMM_glimmerT_43179-T1
Valid prediction for snap_scaffold_18-snap.2489-T1
Valid prediction for snap_scaffold_18-snap.2513-T1
Valid prediction for snap_scaffold_18-snap.2497-T1
Valid prediction for Augustus_model.g28764.t1
Valid prediction for snap_scaffold_18-snap.2518-T1
Valid prediction for Augustus_model.g28767.t1
Couldn't classify 95748, 96179
Sorry, prediction pasa_asmbl_21054.p1 fails validation.
(TTC)	 AG	95748-96179	AA	AGA
Valid prediction for snap_scaffold_18-snap.2523-T1
Valid prediction for snap_scaffold_18-snap.2508-T1
Valid prediction for Augustus_model.g28768.t1
Valid prediction for snap_scaffold_18-snap.2495-T1
Valid prediction for snap_scaffold_18-snap.2510-T1
Valid prediction for GlimmerHMM_glimmerT_43180-T1
Valid prediction for snap_scaffold_18-snap.2519-T1
Valid prediction for snap_scaffold_18-snap.2491-T1
Valid prediction for GlimmerHMM_glimmerT_43183-T1
Valid prediction for GlimmerHMM_glimmerT_43177-T1
Valid prediction for GlimmerHMM_glimmerT_43184-T1
Valid prediction for GlimmerHMM_glimmerT_43178-T1
Valid prediction for Augustus_model.g28766.t1
Valid prediction for GlimmerHMM_glimmerT_43176-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_18-snap.2517-T1
Valid prediction for snap_scaffold_18-snap.2501-T1
Valid prediction for Augustus_model.g28770.t1
Valid prediction for GlimmerHMM_glimmerT_43173-T1
Valid prediction for snap_scaffold_18-snap.2515-T1
Valid prediction for snap_scaffold_18-snap.2490-T1
Valid prediction for Augustus_model.g28763.t1
Valid prediction for snap_scaffold_18-snap.2524-T1
Valid prediction for snap_scaffold_18-snap.2514-T1
Valid prediction for snap_scaffold_18-snap.2488-T1
Valid prediction for snap_scaffold_18-snap.2496-T1
Valid prediction for snap_scaffold_18-snap.2504-T1
Valid prediction for snap_scaffold_18-snap.2526-T1
Valid prediction for snap_scaffold_18-snap.2494-T1
Valid prediction for snap_scaffold_18-snap.2522-T1
Valid prediction for snap_scaffold_18-snap.2509-T1
Valid prediction for snap_scaffold_18-snap.2516-T1
Valid prediction for snap_scaffold_18-snap.2520-T1
Valid prediction for GlimmerHMM_glimmerT_43182-T1
Valid prediction for snap_scaffold_18-snap.2502-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_43172-T1
Valid prediction for snap_scaffold_18-snap.2527-T1
Valid prediction for snap_scaffold_18-snap.2528-T1
Valid prediction for snap_scaffold_18-snap.2499-T1
Valid prediction for snap_scaffold_18-snap.2507-T1
Valid prediction for GlimmerHMM_glimmerT_43175-T1
Valid prediction for snap_scaffold_18-snap.2493-T1
Valid prediction for GlimmerHMM_glimmerT_43174-T1
Valid prediction for snap_scaffold_18-snap.2506-T1
Valid prediction for snap_scaffold_18-snap.2521-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15855, rend_intergenic: 9253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18925, rend_intergenic: 16331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55367, rend_intergenic: 38479  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73314, rend_intergenic: 56128  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85007, rend_intergenic: 83888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92215, rend_intergenic: 85088  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97009, rend_intergenic: 92509  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107394, rend_intergenic: 101538  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112701, rend_intergenic: 111363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118562, rend_intergenic: 116725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162679, rend_intergenic: 151628  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168948, rend_intergenic: 165653  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199271, rend_intergenic: 194800  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200812, rend_intergenic: 199911  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 205037, rend_intergenic: 201280  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 215243
-exon list size: 227


building trellis

0.4    
0.9    
1.3    
1.7    
2.2    
2.6    
3.1    
3.5    
3.9    
4.4    
4.8    
5.2    
5.7    
6.1    
6.6    
7.0    
7.4    
7.9    
8.3    
8.7    
9.2    
9.6    
10.0    
10.5    
10.9    
11.4    
11.8    
12.2    
12.7    
13.1    
13.5    
14.0    
14.4    
14.8    
15.3    
15.7    
16.2    
16.6    
17.0    
17.5    
17.9    
18.3    
18.8    
19.2    
19.7    
20.1    
20.5    
21.0    
21.4    
21.8    
22.3    
22.7    
23.1    
23.6    
24.0    
24.5    
24.9    
25.3    
25.8    
26.2    
26.6    
27.1    
27.5    
27.9    
28.4    
28.8    
29.3    
29.7    
30.1    
30.6    
31.0    
31.4    
31.9    
32.3    
32.8    
33.2    
33.6    
34.1    
34.5    
34.9    
35.4    
35.8    
36.2    
36.7    
37.1    
37.6    
38.0    
38.4    
38.9    
39.3    
39.7    
40.2    
40.6    
41.0    
41.5    
41.9    
42.4    
42.8    
43.2    
43.7    
44.1    
44.5    
45.0    
45.4    
45.9    
46.3    
46.7    
47.2    
47.6    
48.0    
48.5    
48.9    
49.3    
49.8    
50.2    
50.7    
51.1    
51.5    
52.0    
52.4    
52.8    
53.3    
53.7    
54.1    
54.6    
55.0    
55.5    
55.9    
56.3    
56.8    
57.2    
57.6    
58.1    
58.5    
59.0    
59.4    
59.8    
60.3    
60.7    
61.1    
61.6    
62.0    
62.4    
62.9    
63.3    
63.8    
64.2    
64.6    
65.1    
65.5    
65.9    
66.4    
66.8    
67.2    
67.7    
68.1    
68.6    
69.0    
69.4    
69.9    
70.3    
70.7    
71.2    
71.6    
72.1    
72.5    
72.9    
73.4    
73.8    
74.2    
74.7    
75.1    
75.5    
76.0    
76.4    
76.9    
77.3    
77.7    
78.2    
78.6    
79.0    
79.5    
79.9    
80.3    
80.8    
81.2    
81.7    
82.1    
82.5    
83.0    
83.4    
83.8    
84.3    
84.7    
85.2    
85.6    
86.0    
86.5    
86.9    
87.3    
87.8    
88.2    
88.6    
89.1    
89.5    
90.0    
90.4    
90.8    
91.3    
91.7    
92.1    
92.6    
93.0    
93.4    
93.9    
94.3    
94.8    
95.2    
95.6    
96.1    
96.5    
96.9    
97.4    
97.8    
98.3    
98.7    
99.1    
99.6    
-found 23 predictions from path traversal
Error with prediction: snap lend_intergenic: 15855, rend_intergenic: 9253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18925, rend_intergenic: 16331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55367, rend_intergenic: 38479  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73314, rend_intergenic: 56128  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85007, rend_intergenic: 83888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92215, rend_intergenic: 85088  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97009, rend_intergenic: 92509  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107394, rend_intergenic: 101538  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112701, rend_intergenic: 111363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118562, rend_intergenic: 116725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162679, rend_intergenic: 151628  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168948, rend_intergenic: 165653  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199271, rend_intergenic: 194800  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200812, rend_intergenic: 199911  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 205037, rend_intergenic: 201280  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12659
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 200762 - 215243
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 3 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support