-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_18/scaffold_18_10565277-10860634

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_18-snap.2252-T1
Valid prediction for snap_scaffold_18-snap.2259-T1
Valid prediction for GlimmerHMM_glimmerT_43072-T1
Valid prediction for snap_scaffold_18-snap.2283-T1
Valid prediction for GlimmerHMM_glimmerT_43069-T1
Valid prediction for snap_scaffold_18-snap.2256-T1
Valid prediction for snap_scaffold_18-snap.2262-T1
Valid prediction for snap_scaffold_18-snap.2261-T1
Valid prediction for snap_scaffold_18-snap.2295-T1
Valid prediction for snap_scaffold_18-snap.2292-T1
Valid prediction for snap_scaffold_18-snap.2249-T1
Valid prediction for Augustus_model.g28699.t1
Valid prediction for snap_scaffold_18-snap.2277-T1
Valid prediction for GlimmerHMM_glimmerT_43071-T1
Valid prediction for snap_scaffold_18-snap.2281-T1
Valid prediction for snap_scaffold_18-snap.2254-T1
Valid prediction for snap_scaffold_18-snap.2294-T1
Valid prediction for GlimmerHMM_glimmerT_43074-T1
Valid prediction for GlimmerHMM_glimmerT_43068-T1
Valid prediction for snap_scaffold_18-snap.2242-T1
Valid prediction for snap_scaffold_18-snap.2248-T1
Valid prediction for snap_scaffold_18-snap.2279-T1
Valid prediction for GlimmerHMM_glimmerT_43064-T1
Valid prediction for snap_scaffold_18-snap.2264-T1
Valid prediction for snap_scaffold_18-snap.2268-T1
Valid prediction for Augustus_model.g28706.t1
Valid prediction for snap_scaffold_18-snap.2243-T1
Valid prediction for GlimmerHMM_glimmerT_43079-T1
Valid prediction for snap_scaffold_18-snap.2276-T1
Valid prediction for Augustus_model.g28692.t1
Valid prediction for snap_scaffold_18-snap.2296-T1
Valid prediction for snap_scaffold_18-snap.2266-T1
Valid prediction for snap_scaffold_18-snap.2284-T1
Valid prediction for snap_scaffold_18-snap.2250-T1
Valid prediction for Augustus_model.g28709.t1
Valid prediction for snap_scaffold_18-snap.2289-T1
Valid prediction for GlimmerHMM_glimmerT_43058-T1
Valid prediction for snap_scaffold_18-snap.2260-T1
Valid prediction for snap_scaffold_18-snap.2287-T1
Valid prediction for snap_scaffold_18-snap.2246-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_43076-T1
Valid prediction for GlimmerHMM_glimmerT_43062-T1
Valid prediction for snap_scaffold_18-snap.2244-T1
Valid prediction for Augustus_model.g28703.t1
Valid prediction for snap_scaffold_18-snap.2255-T1
Valid prediction for snap_scaffold_18-snap.2272-T1
Valid prediction for snap_scaffold_18-snap.2270-T1
Valid prediction for snap_scaffold_18-snap.2273-T1
Valid prediction for snap_scaffold_18-snap.2291-T1
Valid prediction for snap_scaffold_18-snap.2251-T1
Valid prediction for Augustus_model.g28694.t1
Valid prediction for snap_scaffold_18-snap.2247-T1
Valid prediction for snap_scaffold_18-snap.2263-T1
Valid prediction for snap_scaffold_18-snap.2274-T1
Valid prediction for Augustus_model.g28702.t1
Valid prediction for Augustus_model.g28707.t1
Valid prediction for Augustus_model.g28695.t1
Valid prediction for snap_scaffold_18-snap.2280-T1
Valid prediction for GlimmerHMM_glimmerT_43059-T1
Valid prediction for GlimmerHMM_glimmerT_43073-T1
Valid prediction for snap_scaffold_18-snap.2288-T1
Valid prediction for Augustus_model.g28701.t1
Valid prediction for snap_scaffold_18-snap.2267-T1
Valid prediction for snap_scaffold_18-snap.2282-T1
Valid prediction for snap_scaffold_18-snap.2257-T1
Valid prediction for GlimmerHMM_glimmerT_43066-T1
Valid prediction for snap_scaffold_18-snap.2245-T1
Valid prediction for Augustus_model.g28698.t1
Valid prediction for snap_scaffold_18-snap.2241-T1
Valid prediction for Augustus_model.g28696.t1
Valid prediction for Augustus_model.g28704.t1
Valid prediction for snap_scaffold_18-snap.2269-T1
Valid prediction for Augustus_model.g28700.t1
Valid prediction for GlimmerHMM_glimmerT_43065-T1
Valid prediction for Augustus_model.g28708.t1
Valid prediction for snap_scaffold_18-snap.2265-T1
Valid prediction for Augustus_model.g28693.t1
Valid prediction for GlimmerHMM_glimmerT_43060-T1
Valid prediction for GlimmerHMM_glimmerT_43070-T1
Valid prediction for snap_scaffold_18-snap.2278-T1
Valid prediction for GlimmerHMM_glimmerT_43077-T1
Valid prediction for GlimmerHMM_glimmerT_43078-T1
Valid prediction for GlimmerHMM_glimmerT_43067-T1
Valid prediction for GlimmerHMM_glimmerT_43063-T1
Valid prediction for GlimmerHMM_glimmerT_43075-T1
Valid prediction for snap_scaffold_18-snap.2253-T1
Valid prediction for snap_scaffold_18-snap.2285-T1
Valid prediction for snap_scaffold_18-snap.2258-T1
Valid prediction for snap_scaffold_18-snap.2271-T1
Valid prediction for GlimmerHMM_glimmerT_43061-T1
Valid prediction for Augustus_model.g28697.t1
Valid prediction for snap_scaffold_18-snap.2286-T1
Valid prediction for snap_scaffold_18-snap.2275-T1
Valid prediction for snap_scaffold_18-snap.2290-T1
Valid prediction for snap_scaffold_18-snap.2293-T1
Valid prediction for Augustus_model.g28705.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13639, rend_intergenic: 7324  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19787, rend_intergenic: 14176  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21290, rend_intergenic: 20651  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30406, rend_intergenic: 22012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32651, rend_intergenic: 30749  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36234, rend_intergenic: 32941  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45529, rend_intergenic: 38567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56511, rend_intergenic: 51774  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61924, rend_intergenic: 57082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78225, rend_intergenic: 62700  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88790, rend_intergenic: 78627  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91388, rend_intergenic: 89443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97321, rend_intergenic: 94627  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108742, rend_intergenic: 103337  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175101, rend_intergenic: 109052  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197708, rend_intergenic: 193173  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204986, rend_intergenic: 199577  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211823, rend_intergenic: 206343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 223543, rend_intergenic: 212424  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 238666, rend_intergenic: 223682  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 240848, rend_intergenic: 240018  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 251034, rend_intergenic: 246760  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 251892, rend_intergenic: 251391  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 256509, rend_intergenic: 252014  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 263998, rend_intergenic: 258884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 291613, rend_intergenic: 264990  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 295358
-exon list size: 414


building trellis

0.2    
0.5    
0.7    
1.0    
1.2    
1.4    
1.7    
1.9    
2.2    
2.4    
2.6    
2.9    
3.1    
3.4    
3.6    
3.8    
4.1    
4.3    
4.6    
4.8    
5.0    
5.3    
5.5    
5.8    
6.0    
6.2    
6.5    
6.7    
7.0    
7.2    
7.5    
7.7    
7.9    
8.2    
8.4    
8.7    
8.9    
9.1    
9.4    
9.6    
9.9    
10.1    
10.3    
10.6    
10.8    
11.1    
11.3    
11.5    
11.8    
12.0    
12.3    
12.5    
12.7    
13.0    
13.2    
13.5    
13.7    
13.9    
14.2    
14.4    
14.7    
14.9    
15.1    
15.4    
15.6    
15.9    
16.1    
16.3    
16.6    
16.8    
17.1    
17.3    
17.5    
17.8    
18.0    
18.3    
18.5    
18.8    
19.0    
19.2    
19.5    
19.7    
20.0    
20.2    
20.4    
20.7    
20.9    
21.2    
21.4    
21.6    
21.9    
22.1    
22.4    
22.6    
22.8    
23.1    
23.3    
23.6    
23.8    
24.0    
24.3    
24.5    
24.8    
25.0    
25.2    
25.5    
25.7    
26.0    
26.2    
26.4    
26.7    
26.9    
27.2    
27.4    
27.6    
27.9    
28.1    
28.4    
28.6    
28.8    
29.1    
29.3    
29.6    
29.8    
30.0    
30.3    
30.5    
30.8    
31.0    
31.2    
31.5    
31.7    
32.0    
32.2    
32.5    
32.7    
32.9    
33.2    
33.4    
33.7    
33.9    
34.1    
34.4    
34.6    
34.9    
35.1    
35.3    
35.6    
35.8    
36.1    
36.3    
36.5    
36.8    
37.0    
37.3    
37.5    
37.7    
38.0    
38.2    
38.5    
38.7    
38.9    
39.2    
39.4    
39.7    
39.9    
40.1    
40.4    
40.6    
40.9    
41.1    
41.3    
41.6    
41.8    
42.1    
42.3    
42.5    
42.8    
43.0    
43.3    
43.5    
43.8    
44.0    
44.2    
44.5    
44.7    
45.0    
45.2    
45.4    
45.7    
45.9    
46.2    
46.4    
46.6    
46.9    
47.1    
47.4    
47.6    
47.8    
48.1    
48.3    
48.6    
48.8    
49.0    
49.3    
49.5    
49.8    
50.0    
50.2    
50.5    
50.7    
51.0    
51.2    
51.4    
51.7    
51.9    
52.2    
52.4    
52.6    
52.9    
53.1    
53.4    
53.6    
53.8    
54.1    
54.3    
54.6    
54.8    
55.0    
55.3    
55.5    
55.8    
56.0    
56.2    
56.5    
56.7    
57.0    
57.2    
57.5    
57.7    
57.9    
58.2    
58.4    
58.7    
58.9    
59.1    
59.4    
59.6    
59.9    
60.1    
60.3    
60.6    
60.8    
61.1    
61.3    
61.5    
61.8    
62.0    
62.3    
62.5    
62.7    
63.0    
63.2    
63.5    
63.7    
63.9    
64.2    
64.4    
64.7    
64.9    
65.1    
65.4    
65.6    
65.9    
66.1    
66.3    
66.6    
66.8    
67.1    
67.3    
67.5    
67.8    
68.0    
68.3    
68.5    
68.8    
69.0    
69.2    
69.5    
69.7    
70.0    
70.2    
70.4    
70.7    
70.9    
71.2    
71.4    
71.6    
71.9    
72.1    
72.4    
72.6    
72.8    
73.1    
73.3    
73.6    
73.8    
74.0    
74.3    
74.5    
74.8    
75.0    
75.2    
75.5    
75.7    
76.0    
76.2    
76.4    
76.7    
76.9    
77.2    
77.4    
77.6    
77.9    
78.1    
78.4    
78.6    
78.8    
79.1    
79.3    
79.6    
79.8    
80.0    
80.3    
80.5    
80.8    
81.0    
81.2    
81.5    
81.7    
82.0    
82.2    
82.5    
82.7    
82.9    
83.2    
83.4    
83.7    
83.9    
84.1    
84.4    
84.6    
84.9    
85.1    
85.3    
85.6    
85.8    
86.1    
86.3    
86.5    
86.8    
87.0    
87.3    
87.5    
87.7    
88.0    
88.2    
88.5    
88.7    
88.9    
89.2    
89.4    
89.7    
89.9    
90.1    
90.4    
90.6    
90.9    
91.1    
91.3    
91.6    
91.8    
92.1    
92.3    
92.5    
92.8    
93.0    
93.3    
93.5    
93.8    
94.0    
94.2    
94.5    
94.7    
95.0    
95.2    
95.4    
95.7    
95.9    
96.2    
96.4    
96.6    
96.9    
97.1    
97.4    
97.6    
97.8    
98.1    
98.3    
98.6    
98.8    
99.0    
99.3    
99.5    
99.8    
-found 35 predictions from path traversal
Error with prediction: snap lend_intergenic: 13639, rend_intergenic: 7324  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19787, rend_intergenic: 14176  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21290, rend_intergenic: 20651  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30406, rend_intergenic: 22012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32651, rend_intergenic: 30749  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36234, rend_intergenic: 32941  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45529, rend_intergenic: 38567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56511, rend_intergenic: 51774  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61924, rend_intergenic: 57082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78225, rend_intergenic: 62700  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88790, rend_intergenic: 78627  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91388, rend_intergenic: 89443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97321, rend_intergenic: 94627  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108742, rend_intergenic: 103337  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175101, rend_intergenic: 109052  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197708, rend_intergenic: 193173  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204986, rend_intergenic: 199577  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211823, rend_intergenic: 206343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 223543, rend_intergenic: 212424  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 238666, rend_intergenic: 223682  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 240848, rend_intergenic: 240018  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 251034, rend_intergenic: 246760  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 251892, rend_intergenic: 251391  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 256509, rend_intergenic: 252014  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 263998, rend_intergenic: 258884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 291613, rend_intergenic: 264990  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support