-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_18/scaffold_18_10411805-10568552

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_18-snap.2214-T1
Valid prediction for snap_scaffold_18-snap.2216-T1
Valid prediction for snap_scaffold_18-snap.2223-T1
Valid prediction for snap_scaffold_18-snap.2219-T1
Valid prediction for GlimmerHMM_glimmerT_43039-T1
Valid prediction for HiQ_model.g28683.t1
Valid prediction for GlimmerHMM_glimmerT_43042-T1
Valid prediction for Augustus_model.g28684.t1
Valid prediction for snap_scaffold_18-snap.2207-T1
Valid prediction for snap_scaffold_18-snap.2221-T1
Valid prediction for snap_scaffold_18-snap.2230-T1
Valid prediction for snap_scaffold_18-snap.2212-T1
Valid prediction for snap_scaffold_18-snap.2206-T1
Valid prediction for snap_scaffold_18-snap.2203-T1
Valid prediction for snap_scaffold_18-snap.2232-T1
Valid prediction for snap_scaffold_18-snap.2217-T1
Valid prediction for snap_scaffold_18-snap.2235-T1
Valid prediction for GlimmerHMM_glimmerT_43052-T1
Valid prediction for CodingQuarry_transcript_23895-T1
Valid prediction for GlimmerHMM_glimmerT_43053-T1
Valid prediction for GlimmerHMM_glimmerT_43043-T1
Valid prediction for snap_scaffold_18-snap.2227-T1
Valid prediction for CodingQuarry_transcript_23896-T1
Valid prediction for GlimmerHMM_glimmerT_43048-T1
Valid prediction for snap_scaffold_18-snap.2226-T1
Valid prediction for pasa_asmbl_21114.p1
Valid prediction for snap_scaffold_18-snap.2213-T1
Valid prediction for snap_scaffold_18-snap.2238-T1
Valid prediction for snap_scaffold_18-snap.2209-T1
Couldn't classify 7304, 7495
Sorry, prediction pasa_asmbl_21082.p1 fails validation.
(CAG)	 AC	7304-7495	GT	CTG
(GAG)	 AG	8003-8215	GT	AGG
(GGT)	 AG	8610-8681	GA	AAG
-recovered pasa_asmbl_21082.p1, terminal, 8610, 8681
-recovered pasa_asmbl_21082.p1, internal, 8003, 8215
Valid prediction for Augustus_model.g28682.t1
Valid prediction for snap_scaffold_18-snap.2239-T1
Valid prediction for GlimmerHMM_glimmerT_43054-T1
Valid prediction for GlimmerHMM_glimmerT_43046-T1
Valid prediction for GlimmerHMM_glimmerT_43038-T1
Valid prediction for snap_scaffold_18-snap.2204-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g28686.t1
Valid prediction for GlimmerHMM_glimmerT_43050-T1
Valid prediction for snap_scaffold_18-snap.2231-T1
Valid prediction for snap_scaffold_18-snap.2210-T1
Valid prediction for snap_scaffold_18-snap.2224-T1
Valid prediction for snap_scaffold_18-snap.2215-T1
Couldn't classify 86722, 86793
Couldn't classify 90213, 90321
Sorry, prediction pasa_asmbl_20248.p1 fails validation.
(CTA)	 CG	86722-86793	GT	AGG
(CAC)	 AG	87613-87666	GT	TTG
(GTG)	 AG	88309-88466	GT	AGG
(TGA)	 AG	90213-90321	GT	GGG
-recovered pasa_asmbl_20248.p1, internal, 87613, 87666
-recovered pasa_asmbl_20248.p1, internal, 88309, 88466
-recovered pasa_asmbl_20248.p1, internal, 90213, 90321
Valid prediction for GlimmerHMM_glimmerT_43040-T1
Valid prediction for snap_scaffold_18-snap.2240-T1
Valid prediction for snap_scaffold_18-snap.2211-T1
Valid prediction for Augustus_model.g28690.t1
Valid prediction for GlimmerHMM_glimmerT_43051-T1
Valid prediction for snap_scaffold_18-snap.2205-T1
Valid prediction for snap_scaffold_18-snap.2222-T1
Valid prediction for snap_scaffold_18-snap.2220-T1
Valid prediction for GlimmerHMM_glimmerT_43047-T1
Valid prediction for Augustus_model.g28691.t1
Valid prediction for GlimmerHMM_glimmerT_43057-T1
Valid prediction for snap_scaffold_18-snap.2229-T1
Valid prediction for snap_scaffold_18-snap.2241-T1
Valid prediction for snap_scaffold_18-snap.2237-T1
Valid prediction for GlimmerHMM_glimmerT_43041-T1
Valid prediction for snap_scaffold_18-snap.2236-T1
Valid prediction for GlimmerHMM_glimmerT_43045-T1
Valid prediction for GlimmerHMM_glimmerT_43049-T1
Valid prediction for GlimmerHMM_glimmerT_43044-T1
Couldn't classify 81732, 81824
Sorry, prediction pasa_asmbl_20115.p1 fails validation.
(ATG)	 AA	80249-80465	GT	AGG
(GTC)	 AG	80880-80994	GT	AGG
(GAA)	 AG	81456-81582	GT	TGG
(GTG)	 AG	81732-81824	CC	CCC
-recovered pasa_asmbl_20115.p1, initial, 80249, 80465
-recovered pasa_asmbl_20115.p1, internal, 80880, 80994
-recovered pasa_asmbl_20115.p1, internal, 81456, 81582
Valid prediction for GlimmerHMM_glimmerT_43055-T1
Valid prediction for Augustus_model.g28687.t1
Valid prediction for Augustus_model.g28688.t1
Valid prediction for snap_scaffold_18-snap.2218-T1
Valid prediction for GlimmerHMM_glimmerT_43056-T1
Valid prediction for snap_scaffold_18-snap.2233-T1
Valid prediction for snap_scaffold_18-snap.2228-T1
Valid prediction for snap_scaffold_18-snap.2208-T1
Valid prediction for Augustus_model.g28685.t1
Valid prediction for snap_scaffold_18-snap.2234-T1
Valid prediction for Augustus_model.g28689.t1
Valid prediction for snap_scaffold_18-snap.2225-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 74796, rend_intergenic: 74793  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17786, rend_intergenic: 12367  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22536, rend_intergenic: 18988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25240, rend_intergenic: 23375  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35296, rend_intergenic: 26164  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68921, rend_intergenic: 60258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76500, rend_intergenic: 69444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83689, rend_intergenic: 81165  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88324, rend_intergenic: 87413  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99152, rend_intergenic: 88724  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105555, rend_intergenic: 99286  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108561, rend_intergenic: 105573  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113287, rend_intergenic: 109853  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118474, rend_intergenic: 113812  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142556, rend_intergenic: 138414  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146789, rend_intergenic: 144744  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151520, rend_intergenic: 147536  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153472, rend_intergenic: 152492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 156748
-exon list size: 257


building trellis

0.4    
0.8    
1.2    
1.5    
1.9    
2.3    
2.7    
3.1    
3.5    
3.9    
4.2    
4.6    
5.0    
5.4    
5.8    
6.2    
6.6    
6.9    
7.3    
7.7    
8.1    
8.5    
8.9    
9.3    
9.7    
10.0    
10.4    
10.8    
11.2    
11.6    
12.0    
12.4    
12.7    
13.1    
13.5    
13.9    
14.3    
14.7    
15.1    
15.4    
15.8    
16.2    
16.6    
17.0    
17.4    
17.8    
18.1    
18.5    
18.9    
19.3    
19.7    
20.1    
20.5    
20.8    
21.2    
21.6    
22.0    
22.4    
22.8    
23.2    
23.6    
23.9    
24.3    
24.7    
25.1    
25.5    
25.9    
26.3    
26.6    
27.0    
27.4    
27.8    
28.2    
28.6    
29.0    
29.3    
29.7    
30.1    
30.5    
30.9    
31.3    
31.7    
32.0    
32.4    
32.8    
33.2    
33.6    
34.0    
34.4    
34.7    
35.1    
35.5    
35.9    
36.3    
36.7    
37.1    
37.5    
37.8    
38.2    
38.6    
39.0    
39.4    
39.8    
40.2    
40.5    
40.9    
41.3    
41.7    
42.1    
42.5    
42.9    
43.2    
43.6    
44.0    
44.4    
44.8    
45.2    
45.6    
45.9    
46.3    
46.7    
47.1    
47.5    
47.9    
48.3    
48.6    
49.0    
49.4    
49.8    
50.2    
50.6    
51.0    
51.4    
51.7    
52.1    
52.5    
52.9    
53.3    
53.7    
54.1    
54.4    
54.8    
55.2    
55.6    
56.0    
56.4    
56.8    
57.1    
57.5    
57.9    
58.3    
58.7    
59.1    
59.5    
59.8    
60.2    
60.6    
61.0    
61.4    
61.8    
62.2    
62.5    
62.9    
63.3    
63.7    
64.1    
64.5    
64.9    
65.3    
65.6    
66.0    
66.4    
66.8    
67.2    
67.6    
68.0    
68.3    
68.7    
69.1    
69.5    
69.9    
70.3    
70.7    
71.0    
71.4    
71.8    
72.2    
72.6    
73.0    
73.4    
73.7    
74.1    
74.5    
74.9    
75.3    
75.7    
76.1    
76.4    
76.8    
77.2    
77.6    
78.0    
78.4    
78.8    
79.2    
79.5    
79.9    
80.3    
80.7    
81.1    
81.5    
81.9    
82.2    
82.6    
83.0    
83.4    
83.8    
84.2    
84.6    
84.9    
85.3    
85.7    
86.1    
86.5    
86.9    
87.3    
87.6    
88.0    
88.4    
88.8    
89.2    
89.6    
90.0    
90.3    
90.7    
91.1    
91.5    
91.9    
92.3    
92.7    
93.1    
93.4    
93.8    
94.2    
94.6    
95.0    
95.4    
95.8    
96.1    
96.5    
96.9    
97.3    
97.7    
98.1    
98.5    
98.8    
99.2    
99.6    
-found 26 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 74796, rend_intergenic: 74793  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17786, rend_intergenic: 12367  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22536, rend_intergenic: 18988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25240, rend_intergenic: 23375  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35296, rend_intergenic: 26164  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68921, rend_intergenic: 60258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76500, rend_intergenic: 69444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83689, rend_intergenic: 81165  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88324, rend_intergenic: 87413  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99152, rend_intergenic: 88724  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105555, rend_intergenic: 99286  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108561, rend_intergenic: 105573  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113287, rend_intergenic: 109853  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118474, rend_intergenic: 113812  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142556, rend_intergenic: 138414  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146789, rend_intergenic: 144744  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151520, rend_intergenic: 147536  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153472, rend_intergenic: 152492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support